Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,552,934 – 16,553,054 |
Length | 120 |
Max. P | 0.648821 |
Location | 16,552,934 – 16,553,054 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -32.72 |
Consensus MFE | -29.06 |
Energy contribution | -28.42 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.13 |
Mean z-score | -1.26 |
Structure conservation index | 0.89 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16552934 120 + 23771897 UACUGGCCAAGUCGGCACUGGACUACGCACUGUUGAAUGGGCACUUCAUUAUUAUAAGGUGUCGGUUUGUCCAGCACUACAUCGACAAGUAUGAGCCGCAAUACGCCAAGUACAUAUUAA (((((((.....((((.((((((...........((((.(((((((.((....)).))))))).))))))))))((.(((........))))).))))......))).))))........ ( -31.70) >DroSec_CAF1 5889 120 + 1 UACUGGCCAAGUCGGCACUGGACUACGCACUGCUAAAUGGACACUUCAUUAUUAUAAGGUGCCGAUUUGUCCAGCACUACAUCGACAAGUAUGAGCCGCAAUACGCCAAGUACAUAAUAA ..((((.((((((((((((.......((...))..((((((...)))))).......)))))))))))).))))..............((((..((........))...))))....... ( -30.80) >DroSim_CAF1 5820 120 + 1 UACUGGCCAAGUCGGCACUGGACUACGCACUGCUGAAUGGACACUUCAUUAUUAUAAGGUGCCGAUUUGUCCAGCACUACAUCGACAAGUAUGAGCCGCAAUACGCCAAGUACAUAAUAA (((((((.....((((.((((((...(((((....((((((...)))))).......)))))......))))))((.(((........))))).))))......))).))))........ ( -31.00) >DroEre_CAF1 7140 120 + 1 UACUGGCCAAGGCGGCACUGGACUACGCGCUACUGAACGGGCAAUUCAUUGUGAUCAAGUGCCGGUUUGUCCAGUACUACAUCGACAAAUAUGAGCCACAAUACGCCAAGUACAUACUGA (((((((....(.((((((((((...........((((.((((.....(((....))).)))).)))))))))))....(((........))).))).).....))).))))........ ( -32.00) >DroYak_CAF1 6047 120 + 1 UACUGGCCAAGGCGGCACUGGACUACGCACUGCUCAACGGGCAAUUCAUUGUUAUCAAGUGCCGGUUUGUCCAGUACUACAUCGACAAAUAUGAGCCGCAAUACGCCGAGUACAUACUGA (((((((....((((((((((((.((((((((((.....)))).....(((....)))))))..))..)))))))....(((........))).))))).....))).))))........ ( -38.10) >consensus UACUGGCCAAGUCGGCACUGGACUACGCACUGCUGAAUGGGCACUUCAUUAUUAUAAGGUGCCGGUUUGUCCAGCACUACAUCGACAAGUAUGAGCCGCAAUACGCCAAGUACAUAAUAA (((((((.....((((.((((((..((((((....(((((........)))))....)))).))....)))))).....(((........))).))))......)))).)))........ (-29.06 = -28.42 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:16 2006