| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,537,361 – 16,537,472 |
| Length | 111 |
| Max. P | 0.661490 |
| Location | 16,537,361 – 16,537,472 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.91 |
| Mean single sequence MFE | -27.79 |
| Consensus MFE | -12.41 |
| Energy contribution | -13.75 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16537361 111 - 23771897 GUCACGAGCACAAUUUAUGAGGCAUCAACUGUCGUCUAUUCGUA------UAUUGAAAGCGAAAUU---CACAUAAUUUGUACCAAGAAAUUCACGCGAUCAUUUUGGCGGUGGCAAUUA (((((..((((((.(((((((((..(....)..)))).(((((.------........)))))...---..))))).))))..(((((...((....))...))))))).)))))..... ( -24.50) >DroSec_CAF1 150303 111 - 1 GUCACGAGCACAAUUUAUGAGGCAUAAACUGUCGUCUAUUCGUA------UAUUCAAAGCGAAAUU---CACAUAAUUUGUGCCAAGAAAUUCACGCGAUCAUUUUGGCGGUGGCAAUUA ((((((.((((((.(((((.((((.....)))).....(((((.------........)))))...---..))))).)))))))..........(((.(......).))))))))..... ( -30.40) >DroSim_CAF1 153728 111 - 1 GUCACGAGCACAAUUUAUGAGGCAUAAACUGUCGUCUAUUCGUA------UAUUUAAAGCGAAAUU---CACAUAAUUUGUGCCAAGAAAUUCACGCGAUCAUUUUGGCGGUGGCAAUUA ((((((.((((((.(((((.((((.....)))).....(((((.------........)))))...---..))))).)))))))..........(((.(......).))))))))..... ( -30.40) >DroEre_CAF1 148250 102 - 1 GUCAUGAGCACAAUUUAUGAGGCAU-AACUAUCGUCUAUUC--------------AGAACGAAAUU---CACAUAAUUUGCGCCAAGAAAUUCUCGCGAUCAUUUUGGCAGCGGCAAUUG (((....(((....(((((((....-..)).((((((....--------------)).))))....---..)))))..)))(((((((...((....))...)))))))...)))..... ( -21.00) >DroYak_CAF1 151367 103 - 1 GUCAUGAGCACAAUUUAUGAGGCAUUAACUGCCGUCUAUUC--------------AGAACGAAAUU---CACAUAAUUUGCGCCAAGAAAUUCGCGCGAUCUUUUUGGCAGCGGCAAUUA (((....(((....(((((.((((.....)))).....(((--------------.....)))...---..)))))..)))((((((((..((....))..))))))))...)))..... ( -26.20) >DroAna_CAF1 151445 106 - 1 -----------AUUUUGUGAUGCUCUAACUGUGG-CAGUUUGCAUCAGACUAGCCAAAAC--AAUUGAGCUCAUAAAUUGGGCCAAAGUGAUCACUUGGUCCAUUUGGCAGUUUAAAUUA -----------..(((((((.((((......(((-(((((((...)))))).))))....--....))))))))))).((((((((.((....))))))))))................. ( -34.24) >consensus GUCACGAGCACAAUUUAUGAGGCAUAAACUGUCGUCUAUUCGUA______UAUU_AAAACGAAAUU___CACAUAAUUUGUGCCAAGAAAUUCACGCGAUCAUUUUGGCAGUGGCAAUUA (((.......(((.(((((.((((.....)))).....((((.................))))........))))).))).(((((((...((....))...)))))))...)))..... (-12.41 = -13.75 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:11 2006