Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,536,020 – 16,536,227 |
Length | 207 |
Max. P | 0.995911 |
Location | 16,536,020 – 16,536,127 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 82.82 |
Mean single sequence MFE | -28.16 |
Consensus MFE | -18.38 |
Energy contribution | -18.22 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -1.78 |
Structure conservation index | 0.65 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16536020 107 + 23771897 CCAUCUCUACUGGCCAAAUGCUUACAUAUUUGUUUGUUUGCUUUUCCCUAGGUAGUUAGUUGGCCCACAUAAUGGGCCGAAA-----CUCACCCACGCCCCUCAGGUAGCAA- ......((((((((.....((..(((........)))..)).........(((((((..((((((((.....))))))))))-----)).)))...))).....)))))...- ( -29.00) >DroSec_CAF1 148988 108 + 1 CCAUCUCUUCUGGCCAAAUGCUUACAUAUUGGUUUGUUUGUUUUUACCUAGGUA----GUUGGCCCACAUAAUGGGCCGAGACUCGACUCACCCACGCUCCUCAUGUAGCAA- (((.......))).....((((.((((...(((..(......)..))).(((.(----((.((((((.....))))))(((......)))......)))))).)))))))).- ( -26.00) >DroSim_CAF1 152400 108 + 1 CCAUCUCUUCUGGCCAAAUGCUUACAUAUUGGUUUGUUUGUUUUUACCUAGGUA----GUUGGCCCAGAUAAUGGGCCGAGACUCGACUCACCCACGCUCCUCAUGUAGCAA- ........(((((((((.((((((......(((..(......)..)))))))))----.)))).)))))...((((..(((......))).)))).(((.(....).)))..- ( -27.40) >DroEre_CAF1 146994 96 + 1 GCCUCUCUUUUGGCCAAAUGC--------UUGUUUGUUUGUUUUUUCCUAGGUA----GUUGGCCCACAUAAUGGGCCGACA-----CUCGCCCACGCCCCUCAGGUAGCAAA (((........)))(((((..--------..)))))((((((....((((((..----(((((((((.....))))))))).-----...((....)).))).))).)))))) ( -30.40) >DroYak_CAF1 150118 95 + 1 GCCUCUCUUUUGGCCAAAUAU--------UUGUUUGUUUGUUUUUUCAUAGGUA----GUUGGCCCACAUAAUGGGCCGGGA-----CUCACCCACGCCGCUCAGGUAGCAA- (((........)))((((((.--------.....))))))..........(((.----...((((((.....))))))(((.-----....)))..)))(((.....)))..- ( -28.00) >consensus CCAUCUCUUCUGGCCAAAUGCUUACAUAUUUGUUUGUUUGUUUUUACCUAGGUA____GUUGGCCCACAUAAUGGGCCGAGA_____CUCACCCACGCCCCUCAGGUAGCAA_ ...........((((((((............)))))..............(((........((((((.....))))))(((......))))))...))).............. (-18.38 = -18.22 + -0.16)
Location | 16,536,127 – 16,536,227 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 89.29 |
Mean single sequence MFE | -28.26 |
Consensus MFE | -23.70 |
Energy contribution | -22.86 |
Covariance contribution | -0.84 |
Combinations/Pair | 1.26 |
Mean z-score | -2.50 |
Structure conservation index | 0.84 |
SVM decision value | 2.63 |
SVM RNA-class probability | 0.995911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16536127 100 - 23771897 AAUAUUUGGAUUUUUUUGUGGUGUUUAGCCCUAGGAAAUAUUCGGAAUUCCCGCGAGUUUUUGCCGCUCGAAUAUGUCGACGGCUUCAAUACUUGUCAUU ....((((((((((((((.(((.....))).))))))).)))))))......((((((....((((.((((.....))))))))......)))))).... ( -25.90) >DroSec_CAF1 149096 99 - 1 AAAAUCUGAAUU-UUCCGUGGGUUUCAGCCCUAGAAAAUAUUUGGAAUUCCCUCGAGUUUUUGCCGCUCGAAUGUGUCGACGGCUUCAAUACUUGUCAUU ....((..((((-(((...((((....))))..))))..)))..)).......(((((....((((.((((.....))))))))......)))))..... ( -25.70) >DroSim_CAF1 152508 99 - 1 AAAAUCUGAAUU-UUCCGUGGGUUUCAGCCCUAGAAAAUAUUUGGAAUUCCCUCGAGUUCUUGCCGCUCGAAUGUGUCGACGGCUUCAAUACUUGUCAUU ....((..((((-(((...((((....))))..))))..)))..)).......(((((....((((.((((.....))))))))......)))))..... ( -25.70) >DroEre_CAF1 147090 95 - 1 --AAUCUGGAUU-UUC--UGGGGCUCAGCCCUAGAAAAUAUUCGGAAUUCCCGCGAGUUUUUGCUGCUUGAAUAUGUCGACGGCUUCAAUACUUGUCAUU --..((((((((-(((--((((((...))))))))))..)))))))......((((((....((((.((((.....))))))))......)))))).... ( -32.00) >DroYak_CAF1 150213 95 - 1 --AAUCUGGAUU-UUC--UGGGGCUCAGCCCUAGAAAAUAUUCGGAAUUCCCGCGAGUUUUUGCUGCUUGAAUAUGUCGACGGCUUCAAUACUUGUCAUU --..((((((((-(((--((((((...))))))))))..)))))))......((((((....((((.((((.....))))))))......)))))).... ( -32.00) >consensus AAAAUCUGGAUU_UUC_GUGGGGUUCAGCCCUAGAAAAUAUUCGGAAUUCCCGCGAGUUUUUGCCGCUCGAAUAUGUCGACGGCUUCAAUACUUGUCAUU ....(((((((..(((...(((......)))..)))...)))))))......((((((....((((.((((.....))))))))......)))))).... (-23.70 = -22.86 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:10 2006