Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,535,800 – 16,535,895 |
Length | 95 |
Max. P | 0.944724 |
Location | 16,535,800 – 16,535,895 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.31 |
Mean single sequence MFE | -27.74 |
Consensus MFE | -18.05 |
Energy contribution | -18.81 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.22 |
Mean z-score | -1.92 |
Structure conservation index | 0.65 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16535800 95 - 23771897 AAUCGUUUUGGCCAAGUUGUUGCACAAUUUGUAAGCAAUUGCUUGGCCCUAUUGAAGAGCUAAAUAAUGUGGCGUUUGUGUUUGGUUUCUGAUCU------------------------- ..(((....((((((((.(((((((.....))..))))).))))))))....))).((((((((((............)))))))))).......------------------------- ( -26.10) >DroSec_CAF1 148744 118 - 1 AAUCGUUUUGGCCGAGUUGUUGCACAAGUUGUUAGCAAUUGCUUGGCCCUAUUGAAGAGCUAAAUAAUGUGGAGUUU--UUUUGGCUUCUGAUCUCAAUGGAAAACAAAAUGUACAUAUA ....(((((((((((((.(((((((.....))..))))).))))))))((((((((((((((((.((........))--.)))))).)))....)))))))))))).............. ( -34.60) >DroSim_CAF1 152162 112 - 1 AAUCGUUUUGGCCAAGUUGUUGCACAAGUUGUUAGGAAUUGCUUGGCCCUAUUGAAGAGCUAAAUAAUGUGGGGUUU--GUUUGGCUUCUGAUCUCAAUGGAAAACAAAAUGU------A ....(((((((((((((.(((.(((.....))..).))).))))))))(((((((((((((((((((........))--))))))).)))....)))))))))))).......------. ( -34.30) >DroEre_CAF1 146773 100 - 1 AAUCGUUUUGGCCAAGU---UGCACAAGCUGUAAGCAAAUGUUUGGCCCUAUUGAGGGGGCAAAUAAAUU----UUU--CGCUGGCUUCUGAUCUCAUCUGAUAAU-----AU------A .((((....(((((...---.((....((.....))...((((((.((((.....)))).))))))....----...--.)))))))..)))).............-----..------. ( -22.70) >DroYak_CAF1 149886 96 - 1 AAUCGUUUUGGCCAAGU---UGCACAAGUUGUAAGCAAUUGUUUGGCCCUAUUGAAGAGGUAAAUAAUGU----UUU--CUUUGGCGUCUGAUCUCAUACAAUAA--------------- .........((((((((---(((((.....))..)))))...)))))).(((((..(((((.....((((----(..--....)))))...)))))...))))).--------------- ( -21.00) >consensus AAUCGUUUUGGCCAAGUUGUUGCACAAGUUGUAAGCAAUUGCUUGGCCCUAUUGAAGAGCUAAAUAAUGUGG_GUUU__CUUUGGCUUCUGAUCUCAAUGGAAAA_______U______A ..(((....((((((((.(((((((.....))..))))).))))))))....)))(((((((((................)))))).))).............................. (-18.05 = -18.81 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:08 2006