Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,535,624 – 16,535,715 |
Length | 91 |
Max. P | 0.594541 |
Location | 16,535,624 – 16,535,715 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.97 |
Mean single sequence MFE | -13.76 |
Consensus MFE | -9.15 |
Energy contribution | -9.28 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.13 |
Mean z-score | -1.16 |
Structure conservation index | 0.66 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16535624 91 - 23771897 UAACAAUGUUGCCAAAAUCGUUCACAU----------UAAUCACCUA-------------------AAUCUAUUUUAAUCCCAGACAAAGAAACAUAUUUUUAAUGGGAUUAGGUAAAUU ........(((((......(....)..----------..........-------------------.........((((((((...(((((......)))))..)))))))))))))... ( -14.70) >DroSim_CAF1 151942 110 - 1 UAACAAUGUUGCCAAAAUCGUUCACAU----------AAAACACCUACCUACUGGUAAAGUUCUGCAAGCUAUUUUAAUCCCAGACAAAGAACCAUAUUUUUAAUGGGCUUAGGUAAAUU ........((((((((((.(((..((.----------..(((...((((....))))..))).))..))).)))))...((((...(((((......)))))..))))....)))))... ( -16.90) >DroEre_CAF1 146606 78 - 1 ----AAUGUACCCAUAAUCCCUUAUAU--------------------------------------UAAGCUAUUUUAAUUCCAGACAAAGAACAAUAUUUUUAAUGGGAUUAGGUAAAUU ----....((((..(((((((....((--------------------------------------((((....)))))).......(((((......)))))...))))))))))).... ( -11.20) >DroYak_CAF1 149686 108 - 1 UAA-AAUGUACUCAAAAUCCUUCAUUUUCAUUUCAUUAAAUCACUUU---------AAUGUUC-GCAAGCUAUUUUAAUCCCAGACAAAGAACCAUAUUUUUAAUGGGCUUAAG-AAAUU .((-((((..............)))))).....(((((((....)))---------))))..(-....)...((((((.((((...(((((......)))))..)))).)))))-).... ( -12.24) >consensus UAA_AAUGUACCCAAAAUCCUUCACAU__________AAAUCACCUA__________________CAAGCUAUUUUAAUCCCAGACAAAGAACCAUAUUUUUAAUGGGAUUAGGUAAAUU .........................................................................((((((((((...(((((......)))))..))))))))))...... ( -9.15 = -9.28 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:07 2006