Locus 6222

Sequence ID 3L_DroMel_CAF1
Location 16,534,539 – 16,534,629
Length 90
Max. P 0.683979
window9984

overview

Window 4

Location 16,534,539 – 16,534,629
Length 90
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 82.84
Mean single sequence MFE -25.16
Consensus MFE -15.12
Energy contribution -16.00
Covariance contribution 0.88
Combinations/Pair 1.16
Mean z-score -2.06
Structure conservation index 0.60
SVM decision value 0.31
SVM RNA-class probability 0.683979
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16534539 90 + 23771897
--------GAACCGAGAUAUUACACAGUCCUCUCCUAUAUGUACAUA-UAUGU-UGGGUAUUUAUGGACAGUCUUGGGCGACCGGAACAUCCAUGUUCCG
--------...(((((((........((((...(((((((((....)-)))).-)))).......)))).))))))).....(((((((....))))))) ( -24.10)
>DroSec_CAF1 147795 91 + 1
--------GAACCGAGAUAUUACACAGUCCUCUCCUAUAUGUACAUA-CAUACGUACGUAUUUAUGGACAGUCUUGGGCGACCGGAACAUCCAUGUUCCG
--------...(((((((........((((......((((((((...-.....))))))))....)))).))))))).....(((((((....))))))) ( -27.80)
>DroSim_CAF1 150892 98 + 1
AGCCAUAUGAACCGAGAUAUUACACAGUCCUCUCAUAUAUGUACAUA-UAUGU-UUUGUAUUUAUGGACAGUCUUGGGCGACCGGAACAUCCAUGUUCCG
...........(((((((........((((....(((((...(((..-..)))-..)))))....)))).))))))).....(((((((....))))))) ( -23.00)
>DroEre_CAF1 145563 92 + 1
CACCAUAUAAAGCCAGAUAUUACACAGGCCUCCCGUAUAUACAUAU-----GU-U--GUAUAUAUGGACAGUCUUGGGAGACCGGAACAUCCAUGUUCCG
.........................((((...(((((((((((...-----..-)--))))))))))...)))).((....))((((((....)))))). ( -28.40)
>DroYak_CAF1 148633 95 + 1
---CAUAUAAUGCGAGAUAUUACACAGUCCUCUCGUAUAUGCAUAUAAUAUGU-U-GGUACUUAUGGACAGUCUUGGGCGACCGGAACAUCCAUGUUCCG
---......((((((((.............))))))))..(((((...)))))-.-((....((((((..((..(((....)))..)).))))))..)). ( -22.52)
>consensus
___CAUAUGAACCGAGAUAUUACACAGUCCUCUCCUAUAUGUACAUA_UAUGU_U_GGUAUUUAUGGACAGUCUUGGGCGACCGGAACAUCCAUGUUCCG
..........................((((....((((....(((.....)))....))))....))))......((....))((((((....)))))). (-15.12 = -16.00 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:06 2006