Locus 622

Sequence ID	3L_DroMel_CAF1
Location	1,841,989 – 1,842,082
Length	93
Max. P	0.920167

overview

Window 7

Location	1,841,989 – 1,842,082
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	91.87
Mean single sequence MFE	-22.82
Consensus MFE	-21.88
Energy contribution	-21.32
Covariance contribution	-0.56
Combinations/Pair	1.14
Mean z-score	-1.35
Structure conservation index	0.96
SVM decision value	1.13
SVM RNA-class probability	0.920167
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1841989 93 - 23771897
GUGAGUGAGUGUGGCUUUCUAGCAAUCUCUAGCAAUCGCGGCUUAAAAGAGGCCGCCUUAGUAUCGAUUACAAAUUAUGCAUAAAACUUAACU
.((((((((....(((....)))...)))..(((...(((((((.....)))))))....(((.....)))......))).....)))))... ( -24.10)
>DroSec_CAF1 1207 91 - 1
GUGAGUGAGUGUGGCUCUCUAGCAAU--CUAGCAAUCGCGGCUCAAAAGGGGCCGCCUUAGUAUCGAUUACAAAUAAUGCAUAAAACUUAACU
((.((.(((.....))).)).))...--...(((...(((((((.....)))))))....(((.....)))......)))............. ( -23.30)
>DroSim_CAF1 1209 91 - 1
GUGAGUGAGUGUGGCUCUCUAGCAAU--CUAGCAAUCGCGGCUCAAAAGGGGCCGCCUUAGUAUCGAUUACAAAUAAUGCAUAAAACUUAACU
((.((.(((.....))).)).))...--...(((...(((((((.....)))))))....(((.....)))......)))............. ( -23.30)
>DroEre_CAF1 1191 83 - 1
GUGAGUGAGUGUGGCUCUCUA----------GCAAUCGCGGCUCAAAAGGGGCCGCCUUAGUAUCGAUUACAAAUAAUGCAUAAAACUUAACU
.((((((((.....)))....----------(((...(((((((.....)))))))....(((.....)))......))).....)))))... ( -22.60)
>DroYak_CAF1 1191 83 - 1
GUGAGUGAGUGUGGCUCUCUA----------GCAAUCGCGGCUUAAAAGGGGCCGCCUUAGUAUCGAUUACAAAUAAUGCAUAAAACUUAACU
.((((((((.....)))....----------(((...(((((((.....)))))))....(((.....)))......))).....)))))... ( -20.80)
>consensus
GUGAGUGAGUGUGGCUCUCUAGCAAU__CUAGCAAUCGCGGCUCAAAAGGGGCCGCCUUAGUAUCGAUUACAAAUAAUGCAUAAAACUUAACU
.((((((((.....)))..............(((...(((((((.....)))))))....(((.....)))......))).....)))))... (-21.88 = -21.32 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:00 2006