Locus 6219

Sequence ID 3L_DroMel_CAF1
Location 16,530,887 – 16,531,005
Length 118
Max. P 0.592035
window9979

overview

Window 9

Location 16,530,887 – 16,531,005
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.11
Mean single sequence MFE -37.45
Consensus MFE -24.21
Energy contribution -24.77
Covariance contribution 0.56
Combinations/Pair 1.14
Mean z-score -1.45
Structure conservation index 0.65
SVM decision value 0.12
SVM RNA-class probability 0.592035
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16530887 118 - 23771897
CAGAUCGUCAAGGGCACGGACAUUGACAAGCAGUACCUGGUGCCCGGCUGUCAGCCCCAGAAGAUGUGGAUCUUUCACAGGCACGGCACACGACUGCCCAAGAAGAGCAUG--AUCAACA
..(((((((..((((((((..((((.....))))..)).)))))).(((((..(((...((((((....))))))....))))))))....)))(((.(.....).))).)--))).... ( -37.30)
>DroVir_CAF1 166996 118 - 1
CAGAUUGUCAAGGGCACCAACAUGGACAAGCAGUAUCAGGUGCCCGGCUGUGAGCCCAAGAAAAUGUGGAUCUUCCACAGGCACGGCACACGGCUGCCCACGCCAAGCACC--AUUGAGG
.......(((((((((((....(((((.....)).))))))))))(((.(((.(((........(((((.....))))))))..((((......)))))))))).......--.)))).. ( -39.20)
>DroGri_CAF1 135943 118 - 1
CAGAUUGUCAAGGGCACCAACAUGGACAAACAGUACCAGGUGCCCGGCUGUGAGCCCAAAAAGAUGUGGAUCUUUCACAGGCACGGCACUCGACUGCCAACACCAAACACC--AUCCGGG
..((.((((..(((((((....(((((.....)).))))))))))(.(((((((.(((........)))....))))))).)..)))).))..................((--....)). ( -36.30)
>DroWil_CAF1 157335 118 - 1
CAGAUUGUCAAGGGCACCAACAUUGAUAAGCAGUAUCAAGUGCCGGGCUGUGAGCCAAAGAAAAUGUGGAUUUUCCACAGACAUGGCACACGCUUGUCCAA--AGCGUCUGACAUCAAGA
..(((.(((...(((((.....((((((.....)))))))))))((((.(((.((((.......(((((.....)))))....)))).)))((((.....)--))))))))))))).... ( -40.00)
>DroMoj_CAF1 168532 118 - 1
CAGAUCGUCAAGGGCACCAACAUGGAUAAGCAGUACCAGGUGCCCGGCUGUGAGCCGAAGAAGAUGUGGAUCUACCACAGACAUGGCACACGUCUGCCCACACCAGGCACC--AUCCGGG
......(((..(((((((....(((((.....)).))))))))))(((((((.((((.......(((((.....)))))....)))).))))...))).......))).((--....)). ( -38.30)
>DroAna_CAF1 145797 118 - 1
CAGAUUGUCAAAGGCAGCGACAUCGAACGCCAGUAUCUGGUGCCCAACUGUGAGCCCAAGAAGAUGUGGAUCUUCCACAGACACGGCACCCGACUGCCCAAGAAGAGCAUG--AUCAACA
..(((((((...(((..((....))...))).......((((((...(((((.......((((((....)))))))))))....)))))).)))(((.(.....).))).)--))).... ( -33.61)
>consensus
CAGAUUGUCAAGGGCACCAACAUGGACAAGCAGUACCAGGUGCCCGGCUGUGAGCCCAAGAAGAUGUGGAUCUUCCACAGACACGGCACACGACUGCCCAAGCAAAGCACC__AUCAAGA
......(((..(((((((....................)))))))(((.....)))........(((((.....))))))))..((((......))))...................... (-24.21 = -24.77 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:01 2006