Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,526,892 – 16,526,991 |
Length | 99 |
Max. P | 0.984154 |
Location | 16,526,892 – 16,526,991 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.90 |
Mean single sequence MFE | -25.02 |
Consensus MFE | -14.77 |
Energy contribution | -14.85 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.06 |
Mean z-score | -3.16 |
Structure conservation index | 0.59 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16526892 99 + 23771897 UCCAUUUUCCACACACGCACUGAACACCCACACACCUGCGCGUGUGCGUGUGUUUGUGUGUGUAUG---GUUGCUCUUGACUUCUGCGUUGGAAAAUUAAUA ((((....(((.((((((((.((((((.(.(((((......))))).).)))))))))))))).))---)..((...........))..))))......... ( -33.70) >DroSec_CAF1 140344 85 + 1 UCCAUUUUCCACACACGCACUGAACACCCACACACCUGCGCGUGUG--------------UGUGUG---AUUCCUCUUGACUUCUACGUUGGAAAAUUAAUA ...(((((((...........((((((.(((((((......)))))--------------)).)))---.))).....(((......))))))))))..... ( -21.10) >DroSim_CAF1 143322 85 + 1 UCCAUUUUCCACACACGCACUGAACACCCACACACCUGCGCGUGUG--------------UGUGUG---AUUCCUCUUGACUUCUACGUUGGAAAAUUAAUA ...(((((((...........((((((.(((((((......)))))--------------)).)))---.))).....(((......))))))))))..... ( -21.10) >DroEre_CAF1 137930 79 + 1 UCCAUUUUCCACACACGCACUGCUCGCCCACACACCUGUGUGUGUG-----------------------CCUGCUUUUGACUCCUACGUUGGAAAAUUAAUA ...(((((((...........((..((.((((((....)))))).)-----------------------)..))....(((......))))))))))..... ( -19.90) >DroYak_CAF1 140861 88 + 1 UCCAUUUUCCACACACGCACUGGACGCCCACACACCUGUGAGUGUG--------------UGUGUGUGUCUUGCUCUUGACUCCUACGUUGGAAAAUUAAUA ...((((((((((((((((((((....)).(((....)))))))))--------------)))))..(((........))).........)))))))..... ( -29.30) >consensus UCCAUUUUCCACACACGCACUGAACACCCACACACCUGCGCGUGUG______________UGUGUG___AUUGCUCUUGACUUCUACGUUGGAAAAUUAAUA ...(((((((.(((((((.(.................).)))))))................................(((......))))))))))..... (-14.77 = -14.85 + 0.08)
Location | 16,526,892 – 16,526,991 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 82.90 |
Mean single sequence MFE | -28.50 |
Consensus MFE | -19.48 |
Energy contribution | -19.40 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -2.87 |
Structure conservation index | 0.68 |
SVM decision value | 1.97 |
SVM RNA-class probability | 0.984154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16526892 99 - 23771897 UAUUAAUUUUCCAACGCAGAAGUCAAGAGCAAC---CAUACACACACAAACACACGCACACGCGCAGGUGUGUGGGUGUUCAGUGCGUGUGUGGAAAAUGGA .........((((..((...........))..(---(((((((.(((....((((.(((((((....))))))).))))...))).))))))))....)))) ( -37.70) >DroSec_CAF1 140344 85 - 1 UAUUAAUUUUCCAACGUAGAAGUCAAGAGGAAU---CACACA--------------CACACGCGCAGGUGUGUGGGUGUUCAGUGCGUGUGUGGAAAAUGGA .....((((((((((((((....).....(((.---(((.((--------------(((((......))))))).))))))..)))))...))))))))... ( -26.70) >DroSim_CAF1 143322 85 - 1 UAUUAAUUUUCCAACGUAGAAGUCAAGAGGAAU---CACACA--------------CACACGCGCAGGUGUGUGGGUGUUCAGUGCGUGUGUGGAAAAUGGA .....((((((((((((((....).....(((.---(((.((--------------(((((......))))))).))))))..)))))...))))))))... ( -26.70) >DroEre_CAF1 137930 79 - 1 UAUUAAUUUUCCAACGUAGGAGUCAAAAGCAGG-----------------------CACACACACAGGUGUGUGGGCGAGCAGUGCGUGUGUGGAAAAUGGA .....((((((((((((((....)....((..(-----------------------(.((((((....)))))).))..))..)))))...))))))))... ( -23.30) >DroYak_CAF1 140861 88 - 1 UAUUAAUUUUCCAACGUAGGAGUCAAGAGCAAGACACACACA--------------CACACUCACAGGUGUGUGGGCGUCCAGUGCGUGUGUGGAAAAUGGA .....(((((((((((((((((((........))).....((--------------((((((....))))))))....)))..)))))...))))))))... ( -28.10) >consensus UAUUAAUUUUCCAACGUAGAAGUCAAGAGCAAG___CACACA______________CACACGCGCAGGUGUGUGGGUGUUCAGUGCGUGUGUGGAAAAUGGA .....((((((((((((((....)................................(((((((....))))))).........)))))...))))))))... (-19.48 = -19.40 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:59 2006