Locus 6217

Sequence ID 3L_DroMel_CAF1
Location 16,526,011 – 16,526,121
Length 110
Max. P 0.827224
window9976

overview

Window 6

Location 16,526,011 – 16,526,121
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.94
Mean single sequence MFE -24.60
Consensus MFE -16.60
Energy contribution -17.10
Covariance contribution 0.50
Combinations/Pair 1.24
Mean z-score -1.80
Structure conservation index 0.67
SVM decision value 0.70
SVM RNA-class probability 0.827224
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16526011 110 + 23771897
AUC---AUUUCCUACCCCUGAAGAACAUUUGAUUCGGGUUAAUCCUUGCUGUCCACGGCAGGAUCUCAACUGGUUUCAGUCCG------ACCCGAAGCCCAAACUACUAUUA-GCAAUUC
...---...........((((......((((.((((((((.(((((.((((....)))))))))....((((....))))..)------)))))))...))))......)))-)...... ( -26.50)
>DroSec_CAF1 139415 110 + 1
CUC---AUUUCCUACCCUUGAAGAACAUUUGAUUCGGGUUAAUACUUGCUGUCCACGGCAGGAUCCCCACUGGUUUCAGUCCG------ACCCGAAGCCCAAACUACCAUCA-GCAAUUC
...---...........((((.(....((((.((((((((....(((((((....)))))))......((((....))))..)------)))))))...))))....).)))-)...... ( -25.90)
>DroSim_CAF1 142410 110 + 1
CUC---AUUUCCUACCCUUGAAGAACAUUUGAUUCGGGUUAAUCCUUGCUGUCCACGGCAGGAUCCCCACUGGUUUCAGUCCG------ACCCGAAGCCCAAACUACCAUCA-GCAAUUC
...---...........((((.(....((((.((((((((.(((((.((((....)))))))))....((((....))))..)------)))))))...))))....).)))-)...... ( -26.60)
>DroEre_CAF1 137008 110 + 1
CUC---AUUUCCUACCCAUAGACAACAUUUGAUCCGGGUUAAUCCUUGCUGUCCACGGCAGGAUCCCAACUAUUUUCAGCCCC------ACCCGGAGUCCAAACUUCCAUCA-GCAAUUC
...---.....................((((.(((((((..(((((.((((....))))))))).....((......))....------)))))))...)))).........-....... ( -22.30)
>DroYak_CAF1 139944 110 + 1
CCC---AUUUUCCAUCCUUGCACAACAUUUGAUCCGGGUUAAUCCUUGCUGUCCACGGCAGGAUCCCAACUACUUUCGGUCCG------ACCCGAGGCCCAAACUUCCAUCA-GCAAUUC
...---...........((((......((((..(((((...(((((.((((....))))))))))))........((((....------..))))))..)))).........-))))... ( -24.46)
>DroAna_CAF1 140361 113 + 1
CUUGUACUUUUCUGGC-------CACAUUUGAUCCGGGUUAAUCCUUGCUGUCCAGUGCAGGAUCCCAACUAAAACCUUUCCAGCGAAGGCCCCGCAUUCAGACUUCCAUCAAGAAACUC
((((......(((((.-------............(((...(((((.((........))))))))))................(((.......)))..))))).......))))...... ( -21.82)
>consensus
CUC___AUUUCCUACCCUUGAAGAACAUUUGAUCCGGGUUAAUCCUUGCUGUCCACGGCAGGAUCCCAACUAGUUUCAGUCCG______ACCCGAAGCCCAAACUACCAUCA_GCAAUUC
...........................((((.(((((((.....(((((((....)))))))......(((......))).........)))))))...))))................. (-16.60 = -17.10 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:58 2006