Locus 6214

Sequence ID	3L_DroMel_CAF1
Location	16,519,534 – 16,519,627
Length	93
Max. P	0.970108

overview

Window 0

Location	16,519,534 – 16,519,627
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	89.47
Mean single sequence MFE	-22.22
Consensus MFE	-18.52
Energy contribution	-18.80
Covariance contribution	0.28
Combinations/Pair	1.08
Mean z-score	-2.03
Structure conservation index	0.83
SVM decision value	1.65
SVM RNA-class probability	0.970108
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16519534 93 + 23771897
UGGCAACAUGCAGGCGAAUUUGUUAACAAAAAAAGGAUUUCCAUGUUGAGAUUUGCCAGCAUCAACGAGUCACGAUAAAAAAAAGGAAGCACG
..((...((((.((((((((..((((((......((....)).)))))))))))))).))))...((.....))..............))... ( -18.10)
>DroSec_CAF1 125789 91 + 1
UGGCAACAUGCAGGCAAAUUUGUUAACAAA-AAAGGAUUUCCAUGUUGAGAUUUGCCAGCUUCCACGAGCCACGAUAAAAA-AAGGCAGCACG
((....))(((.((((((((..((((((..-...((....)).))))))))))))))...........(((..........-..))).))).. ( -21.70)
>DroSim_CAF1 136045 92 + 1
UGGCAACAUGCAGGCAAAUUUGUUAACAAA-AAAGGAUUUCCAUGUUGAGAUUUGCCAGCUUCCACGAGCCACGAUAAAAAGAAGGCAGCACG
((....))(((.((((((((..((((((..-...((....)).))))))))))))))...........(((.............))).))).. ( -21.62)
>DroEre_CAF1 128923 89 + 1
UGGCAACAUGCAGGCAAAUUUGUUAACAAG-AAAGGAUUUCCAUGUUGAGAUUUGCCAGCAACCACCAGCCACGUUA--AA-AAAGAAGCACG
((((....(((.((((((((..((((((.(-((.....)))..)))))))))))))).))).......)))).....--..-........... ( -20.20)
>DroYak_CAF1 133387 90 + 1
UGGCAACAUGCUGGCAAAUUUGUUAACAA--AAAGGAUUUCCAUGUUGAGAUUUGCCAGCAUCCACCAGCCACAAAAAGAA-AAAGAAUGGCG
(((....(((((((((((((..((((((.--...((....)).)))))))))))))))))))...)))((((.........-......)))). ( -29.46)
>consensus
UGGCAACAUGCAGGCAAAUUUGUUAACAAA_AAAGGAUUUCCAUGUUGAGAUUUGCCAGCAUCCACGAGCCACGAUAAAAA_AAGGAAGCACG
((((...((((.((((((((..((((((......((....)).)))))))))))))).))))......))))..................... (-18.52 = -18.80 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:52 2006