Locus 6211

Sequence ID 3L_DroMel_CAF1
Location 16,511,216 – 16,511,310
Length 94
Max. P 0.712016
window9966

overview

Window 6

Location 16,511,216 – 16,511,310
Length 94
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 75.77
Mean single sequence MFE -17.20
Consensus MFE -10.24
Energy contribution -10.13
Covariance contribution -0.11
Combinations/Pair 1.22
Mean z-score -1.53
Structure conservation index 0.60
SVM decision value 0.38
SVM RNA-class probability 0.712016
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16511216 94 + 23771897
CAUUC--CAUACCUCAUUCCCUUCCGCCAUUCUACAAAUAUCA------------UUUUUCCCAUAUUUAUUCAUUU--CUUAAUGUUUUCGGGGGAGGGCCUUCGAAGC
.....--...........(((((((.((.......((((((..------------........))))))...((((.--...)))).....))))))))).......... ( -14.90)
>DroSec_CAF1 117315 94 + 1
CAUUC--CAUACCUCAUUCCCUUCCGCCAUUCUACAAAUAUCA------------UUUUUUCCAUAUCUAUACAUUU--CUUAAUGUUUUCGGGGGAGGGCCUUCGCAGC
.....--...........(((((((.((.......(((.....------------.)))............(((((.--...)))))....))))))))).......... ( -14.20)
>DroSim_CAF1 121050 94 + 1
CAUUC--CAUGCCUCAUUCCCUUCCGCCAUUCUACAAAUAUCA------------UUUUUUCCAUAUCUAUACAUUU--CUUAAUGUUUUCGGGGGAGGGCCUUCGCAGC
.....--..(((......(((((((.((.......(((.....------------.)))............(((((.--...)))))....))))))))).....))).. ( -16.70)
>DroEre_CAF1 120071 89 + 1
CAAGC-------CUCAUUCCCUUCCGCCAUUCGACAAAUAUGA------------UUUUUUCUAUAUUUAUACAUUC--CUUAAUGUGCUUGGGGGAGGGCCUUCGAAGC
...((-------.((...(((((((.(((......((((((((------------.....)).)))))).((((((.--...))))))..)))))))))).....)).)) ( -21.00)
>DroYak_CAF1 124420 98 + 1
CAUACCUCAUACCUCAUUCCCUUCCGCCAUUCGACAAAUAUCA------------UUUUUCCUAUAUUUAUACAUUUUUUUUAAUGUUUUUGGGGGAGGGCCUUCGAAGC
..................(((((((.(((......((((((..------------........))))))..(((((......)))))...)))))))))).......... ( -16.70)
>DroAna_CAF1 127401 98 + 1
CCCCC--AGUAUUUCAUUC-CUUCCGCCAUUCCACCAACAGUAUCAGAGUCAUGCUUUUUUCCUCAGCA-------C--CUCAUUAUUUGGGGGGAGGGGCCUUCAGUGC
.....--.(((((...(((-(((((.(((....((.....))....(((...((((.........))))-------.--)))......))).)))))))).....))))) ( -19.70)
>consensus
CAUUC__CAUACCUCAUUCCCUUCCGCCAUUCUACAAAUAUCA____________UUUUUUCCAUAUCUAUACAUUU__CUUAAUGUUUUCGGGGGAGGGCCUUCGAAGC
..................(((((((.((...............................................................))))))))).......... (-10.24 = -10.13 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:48 2006