| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,497,746 – 16,497,860 |
| Length | 114 |
| Max. P | 0.510029 |
| Location | 16,497,746 – 16,497,860 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.47 |
| Mean single sequence MFE | -30.32 |
| Consensus MFE | -19.57 |
| Energy contribution | -20.83 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.510029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16497746 114 - 23771897 GCGUUGUUGGAAAAUGCAAAAUAGCUUAAGACUUAAGCCAUUGGAUGAAUGAUUCCUGAAGGCAGCCAUAAGUGUCGAAUGACAGAUGAUGACGACAUUUAUGAGCUUUCACC------A (((((.......)))))..(((.(((((.....))))).)))(((........)))(((((((...(((((((((((.((........))..))))))))))).)))))))..------. ( -30.30) >DroSec_CAF1 103824 114 - 1 GGUUCGUUGGAAAAUGCAAAAUAGCUUAAGACUUAAGCCAUUGGAUGAAUGAUUCCUGAAGGCAGCCAUAAGUGUCGAAUGACAGACGAUGACGACAUUUAUGAGCUUUCACC------A (((.....((((...........(((((.....)))))((((.....)))).)))).((((((...(((((((((((.((........))..))))))))))).)))))))))------. ( -29.60) >DroSim_CAF1 107371 114 - 1 GGUUCGUUGGAAAAUGCAAAAUAGCUUAAGACUUAAGCCAUUGGAUGAAUGAUUCCUGAAGGCAGCCGUAAGUGUCGAAUGACAGACGAUGACGACAUUUAUGAGCUUUCACC------A (((.....((((...........(((((.....)))))((((.....)))).)))).((((((...(((((((((((.((........))..))))))))))).)))))))))------. ( -29.20) >DroEre_CAF1 106702 114 - 1 GGCACGUAGGAAAAUGCAAAAUAGCUUAAGACUUAAGCCAUUUGAUGAAUGAUUCCUGAAGGCAGCCAUAAGUGUCGAAUGACAGACGAUGGCGACAUUUAUGAGCUUUCACC------A .((...((((((.((...((((.(((((.....))))).)))).....))..))))))...))((((((((((((((.....((.....)).))))))))))).)))......------. ( -31.80) >DroYak_CAF1 110107 114 - 1 GGCACGUAGGAAAAUGCAAAAUAGCUUAAGACUUAAGCCAUUGGAUGAAUGAUUCCUGAAGGCAGCCAUAAGUGUCGAAUGACAGACGAUGACGACAUUUAUGAGCUUUCACC------A .((...((((((...........(((((.....)))))((((.....)))).))))))...))((((((((((((((.((........))..))))))))))).)))......------. ( -30.10) >DroAna_CAF1 114535 100 - 1 ---------GCGAAUGGAAACCGGCUAAGACCUUUAGGCCCUGAAUGGAUGAUUCCUGA-----------AGUGUCGUCUGACAGACGAUGGAGACAUUUAUGGGCCUUUGUUGAGUGGA ---------......(....)(.(((..(((....((((((...(((((((.((((...-----------...((((((.....)))))))))).)))))))))))))..))).))).). ( -30.90) >consensus GGCUCGUUGGAAAAUGCAAAAUAGCUUAAGACUUAAGCCAUUGGAUGAAUGAUUCCUGAAGGCAGCCAUAAGUGUCGAAUGACAGACGAUGACGACAUUUAUGAGCUUUCACC______A ........((((...........((((((...))))))((((.....)))).))))(((((((...(((((((((((...............))))))))))).)))))))......... (-19.57 = -20.83 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:47 2006