| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,482,843 – 16,482,947 |
| Length | 104 |
| Max. P | 0.627656 |
| Location | 16,482,843 – 16,482,947 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 77.17 |
| Mean single sequence MFE | -25.93 |
| Consensus MFE | -15.91 |
| Energy contribution | -15.72 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16482843 104 - 23771897 UCUUCUCGUGUCCGAUUUCCUCC---GGCAGCAAAUCCUUCAACGGCAGCGCCUGCUGCAUUGUG-CUCAUCUACAUGACCUACACGAUGCUGCCCCUUCGCCUGCGG ......((((..(((........---((((((.............(((((....)))))((((((-.((((....))))....))))))))))))...)))..)))). ( -28.40) >DroVir_CAF1 102796 93 - 1 GUCGCUC-----------AUUUU---UGCAGCAAAUCGUUUAAUGGCAGCGCCUGUUGCAUUGUG-CUCAUCUACAUGACAUACACGAUGUUGCCGCUGCGUUUGCGU ...((..-----------.....---.)).(((((((((...)))((((((...((.((((((((-.((((....))))....)))))))).)))))))))))))).. ( -27.20) >DroPse_CAF1 114473 100 - 1 ACUUCUCUUGC----UUCUCUUC---GGCAGCAAAUCCUUCAAUGGCAGCGCCUGCAGCAUCGUC-CUCAUCUACAUGACCUACACUAUGCUGCCCCUCCGCCUGCGG .......((((----(...(...---.).)))))...........((((((...(((((((.((.-.((((....)))).....)).))))))).....)).)))).. ( -23.00) >DroWil_CAF1 108129 104 - 1 AUAUUCCAUGUU---UUCUCUUCAUGUACAGCAAAUCCUUCAAUGGCAGCUCGUGCUGCAUCGUU-CUCAUCUAUAUGACAUACACGAUGUUGCCGCUGCGAUUGCGG ......((((..---.......))))...........((.((((.(((((..(.((.(((((((.-.((((....)))).....))))))).)))))))).)))).)) ( -25.30) >DroMoj_CAF1 111042 99 - 1 UCCUCUACUGA--A---AUCUCU---UGCAGCAAAUCGUUCAAUGGCAGCGCCUGUUGCAUUGUG-CUCAUCUACAUGACGUACACGAUGUUGCCGCUGCGGUUGCGU ...........--.---......---.(((((....(((...)))((((((...((.((((((((-..(.((.....)).)..)))))))).)))))))).))))).. ( -28.30) >DroPer_CAF1 117643 101 - 1 ACUUCUCUUGC----UUCUCUUC---GGCAGCAAAUCCUUCAAUGGCAGCGCCUGCAGCAUCGUCCCUCAUCUACAUGACCUACACUAUGCUGCCCCUCCGCCUGCGG .......((((----(...(...---.).)))))...........((((((...(((((((.((...((((....)))).....)).))))))).....)).)))).. ( -23.40) >consensus ACUUCUCUUGC____UUCUCUUC___GGCAGCAAAUCCUUCAAUGGCAGCGCCUGCUGCAUCGUG_CUCAUCUACAUGACCUACACGAUGCUGCCCCUGCGCCUGCGG ...........................((((((............(((((....)))))...((...((((....))))...))....))))))....(((....))) (-15.91 = -15.72 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:45 2006