Locus 6206

Sequence ID 3L_DroMel_CAF1
Location 16,479,235 – 16,479,350
Length 115
Max. P 0.509593
window9960

overview

Window 0

Location 16,479,235 – 16,479,350
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 78.24
Mean single sequence MFE -26.12
Consensus MFE -18.35
Energy contribution -19.95
Covariance contribution 1.60
Combinations/Pair 1.17
Mean z-score -1.37
Structure conservation index 0.70
SVM decision value -0.05
SVM RNA-class probability 0.509593
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16479235 115 + 23771897
AAUUAAUACAGCCACAGGCUCUGUCUGGGUUUCGAUUUCAUGAAUAAGAAAAGGACUCAGGCAGAUAGACGUGCACUGUGAAAAAAAAAAUUUAAGAAUUUAACGAGCUUACUUU
.........(((((((((((((((((((((((...((((........)))).))))))))))))).......)).))))).......(((((....))))).....)))...... ( -27.11)
>DroSim_CAF1 94262 112 + 1
AAUUAAUACAGCCACAGGCUCUGUCUGGGUUUCGAUUUCAUGAAUAAGAAAAGGACUCAGGCAGAUAGACGUGCACUGUGA---AAAAAAUUAAAGAAUUUAACGAGCUUAAUUU
.........(((((((((((((((((((((((...((((........)))).))))))))))))).......)).))))).---...(((((....))))).....)))...... ( -27.21)
>DroEre_CAF1 93140 110 + 1
AAUUAAUACAGCCACAGGCUCUGUCUGGGCUUCGAUUUCACAAAUAAGAAUAGGGCUCAGACCGAUAGACGUGCACUGCGA---AA--AAUGUUGGAACUUGCUGAGUUUACUUA
.........((((.(((((...))))))))).....................((((((((.((((((....(((...))).---..--..))))))......))))))))..... ( -25.20)
>DroYak_CAF1 96488 110 + 1
AAUUAAUACAGCCGCAGGCUCUGUCUGGGUUUCGAUUUCAUGAAUAAGAAAAGGACUCAGACAGAUGGACGUGCACUAAGA---AA--AAUGUUAGAAUUGGAUGGGUUUACUUU
.........(((((((.(((((((((((((((...((((........)))).)))))))))))))..).).))).((((.(---..--..).)))).........))))...... ( -28.20)
>DroAna_CAF1 102546 107 + 1
AAUUAAAACAGCCGCAGGCUGUGUCUG-GUUUCCAUUUCAUGAAUAAGACAAUAACCCAGACAAUCGGGUCUACACUGUUA---AA--AGCUAAGGGAU--AUCGAGAUGGUUUC
(((((..((((((...))))))...))-))).(((((((...............((((........)))).....((.(((---..--...))).))..--...))))))).... ( -22.90)
>consensus
AAUUAAUACAGCCACAGGCUCUGUCUGGGUUUCGAUUUCAUGAAUAAGAAAAGGACUCAGACAGAUAGACGUGCACUGUGA___AA__AAUUUAAGAAUUUAACGAGCUUACUUU
............((((((((((((((((((((...((((........)))).))))))))))))).......)).)))))................................... (-18.35 = -19.95 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:42 2006