Locus 6205

Sequence ID 3L_DroMel_CAF1
Location 16,477,166 – 16,477,268
Length 102
Max. P 0.591147
window9959

overview

Window 9

Location 16,477,166 – 16,477,268
Length 102
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 78.69
Mean single sequence MFE -24.85
Consensus MFE -13.19
Energy contribution -14.75
Covariance contribution 1.56
Combinations/Pair 1.04
Mean z-score -2.10
Structure conservation index 0.53
SVM decision value 0.12
SVM RNA-class probability 0.591147
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16477166 102 - 23771897
GGUAUGCAUUAUUCUGUGAGCUAAGUUAGGAGGUAACCUUCAACAUAAUUCUGGAUACUUUGCAACC-UUUUAACUUGUUCUAA--AGCCAGUUGAAAUGUGCCA
((((((((.(((((...(((.((.(((.(((((...)))))))).)).))).)))))...)))....-((((((((.((.....--.)).)))))))).))))). ( -24.90)
>DroSec_CAF1 88452 103 - 1
GGUAUGCAUUAUUGUGUAAGCUAAGUUAAGAAGUAACCUUCAACACAAUUGUGCUUACUUUGCAACCAUUUUAACUUGUUCUAA--AGCCAGUUGAAAUGUUCCA
((((.((((.(((((((.(((...)))..((((....)))).))))))).)))).)))).......((((((((((.((.....--.)).))))))))))..... ( -26.40)
>DroSim_CAF1 92188 105 - 1
GGUAUGCAUUAUUCUGUGAGCUAAGUUAAGAAGUAACCUUCAACACAAUUGUGCUUACUUUGCAACCAUUUUAACUUGUUCUAACCAGCCAGUUGAAAUGUUCCA
(((.((((.......((((((........((((....)))).(((....)))))))))..)))))))(((((((((.(((......))).)))))))))...... ( -24.00)
>DroYak_CAF1 94344 85 - 1
GGUAUGCAU------------------AGAGAGUAAUCUACGCCACAAUUGUGGGUACUUUGCACCCAGUUUAACUGGUUCUUC--AGCCUGUUGAAAGGUCCCA
((...(((.------------------(((((....)))((.((((....)))))).)).)))(((...((((((.(((.....--.))).)))))).))).)). ( -24.10)
>consensus
GGUAUGCAUUAUUCUGUGAGCUAAGUUAAGAAGUAACCUUCAACACAAUUGUGCUUACUUUGCAACCAUUUUAACUUGUUCUAA__AGCCAGUUGAAAUGUUCCA
((..((((.....................((((....))))..(((....))).......))))..((((((((((.(((......))).))))))))))..)). (-13.19 = -14.75 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:41 2006