| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,469,644 – 16,469,753 |
| Length | 109 |
| Max. P | 0.574955 |
| Location | 16,469,644 – 16,469,753 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 80.66 |
| Mean single sequence MFE | -24.05 |
| Consensus MFE | -13.61 |
| Energy contribution | -14.00 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16469644 109 + 23771897 AUGUCAUAUUGGGGCUUGCAGGCGCCAAUAACGCCAGCCACCACAGGACCAAUAUUUAUCCCUGCAAACACACACGUAAGAAAGACAAGAAAUACUUAGAAAAAUUAUU .((((....(((((((....((((.......)))))))).)))((((.............))))...................))))...................... ( -21.82) >DroVir_CAF1 89759 95 + 1 AUAUCAUACUGGGGCUUGCAGGCGCCAAUAACGCCCGCAACGACGGGACCAAUAUUAAUGCCUGCAGGCAAACAA--AAGA-A---AUAAAAUUC--GAUAAA------ .((((....((..(((((((((((..((((...((((......)))).....))))..)))))))))))...)).--..((-(---......)))--))))..------ ( -31.80) >DroSec_CAF1 81169 108 + 1 AUGUCAUAUUGGGGCUUGCAGGCUCCAAUAACGCCAGCCACCACAGGACCAAUAUUUAUGCCUGCAAACACCGAAGUUACA-AGACAAGGAACACUCAGAAAAAUAAUU .(((.((.((((.(.((((((((...((((.......((......)).....))))...)))))))).).)))).)).)))-........................... ( -22.10) >DroSim_CAF1 84868 109 + 1 AUGUCAUAUUGGGGCUUGCAGGCUCCAAUAACGCCAGCCACCACAGGACCAAUAUUUAUCCCUGCAAACACACAGGUUACAAAGACAAGGAACACUCAGCAAAAUAAAU .(((((((((((((((....(((.........))))))).((...)).))))))).....((((........)))).......))))...................... ( -22.70) >DroEre_CAF1 82775 109 + 1 AUAUCAUAUUGCGGCUUGCAGGCUCCAAUGACGCCGGCCACUACAGGACCAAUAUUUAUACCUGCAAACACACAAGUUGCGAGACCAAGGAACACUCAGAAAAAUAAUG ........((((((((((..(((((....)).)))((((......)).))......................))))))))))........................... ( -21.30) >DroYak_CAF1 86665 109 + 1 AUAUCAUAUUGGGGCUUGCAGGCUCCAAUAACGCCAGCCACCACAGGUCCAAUAUUUAUGCCUGCAAACACACAAGUAGCAAGGACAAGAAACACUCAGAGAAAUGGUA ......((((((((((....))))))))))..(((((((......)))......(((.(((((((..((......)).)).))).)).))).............)))). ( -24.60) >consensus AUAUCAUAUUGGGGCUUGCAGGCUCCAAUAACGCCAGCCACCACAGGACCAAUAUUUAUGCCUGCAAACACACAAGUAACAAAGACAAGAAACACUCAGAAAAAUAAUU ......((((((((((....)))))))))).............((((.............))))............................................. (-13.61 = -14.00 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:40 2006