Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,462,829 – 16,462,920 |
Length | 91 |
Max. P | 0.632148 |
Location | 16,462,829 – 16,462,920 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 79.11 |
Mean single sequence MFE | -23.37 |
Consensus MFE | -14.32 |
Energy contribution | -14.47 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.24 |
Mean z-score | -1.57 |
Structure conservation index | 0.61 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632148 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16462829 91 + 23771897 --------AUCCUCU----------UUAUCCAAUCUUUACUGUGCCCGUCCAUCUUACUGUCAACUUGGCUGUGACAACUUCUCAGCAAAGUUUAGACGGUUAGUUG-GU --------.......----------........................(((.((.(((((((((((.((((.((.....)).)))).)))))..)))))).)).))-). ( -22.30) >DroSec_CAF1 74321 92 + 1 --------AUCCUCU----------UUACCCAAUCUUCACUGUUCCCGUCCAUCUUACUGUCAACUUGGCUGUGACAACUUCUCAGAAAGGUUUAGACGGUUAGUUGGGU --------.......----------..(((((......((((...(((((.(((((.(((..((.(((.......))).))..))).)))))...))))).))))))))) ( -21.30) >DroSim_CAF1 76629 91 + 1 --------AUCCUCU----------UUACCCAAUCUUCACUGUUCCCGUCCAUCUUACUGUCAACUUGGCUGUGACAACUUCUCAGCAAAGUUUAGACGGUUAGUUG-GU --------.......----------........................(((.((.(((((((((((.((((.((.....)).)))).)))))..)))))).)).))-). ( -22.30) >DroEre_CAF1 75999 99 + 1 AUGAAAAGAUUCUCU----------UUACGCAGUUUGUACUGUUCCUGUCUAUCUUACCGUCAACUUGGCUGUGACAACUUCCCAGCAAAGUUUAGAUGGUUAGUUG-GU ..(.((((.....))----------)).)(((((....)))))......(((.((.(((((((((((.((((.((.....)).)))).)))))..)))))).)).))-). ( -24.60) >DroYak_CAF1 78849 91 + 1 --------AUUCUCA----------UUACCCAGUGUGUACUGUUCCUGUCUAUCUUACUGUCAACUUGGCUGUGACGACUUCUCAGCAAAGUUUAGAUGGUUAGUUG-GU --------.......----------.....((((....)))).......(((.((.(((((((((((.((((.((.....)).)))).)))))..)))))).)).))-). ( -19.40) >DroAna_CAF1 86731 101 + 1 --------GCCGUAUGUGUGCAAUCUUAACUAGUGACUACUGUGGCUGCCUAUCUCAGUGUCAGCCUGGCUGUGACAACUUCUCGGCGAAGAGUAGUCGGUUAGUUG-GU --------((((((....)))......(((((.((((((((.(((((((((.....)).).)))))..((((.((.....)).))))..).)))))))).).)))))-)) ( -30.30) >consensus ________AUCCUCU__________UUACCCAAUCUUUACUGUUCCCGUCCAUCUUACUGUCAACUUGGCUGUGACAACUUCUCAGCAAAGUUUAGACGGUUAGUUG_GU ..................................................((.((.(((((((((((.((((.((.....)).)))).)))))..)))))).)).))... (-14.32 = -14.47 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:39 2006