Locus 6201

Sequence ID 3L_DroMel_CAF1
Location 16,458,619 – 16,458,739
Length 120
Max. P 0.911542
window9954

overview

Window 4

Location 16,458,619 – 16,458,739
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.44
Mean single sequence MFE -43.38
Consensus MFE -22.92
Energy contribution -23.98
Covariance contribution 1.06
Combinations/Pair 1.32
Mean z-score -2.59
Structure conservation index 0.53
SVM decision value 1.08
SVM RNA-class probability 0.911542
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16458619 120 + 23771897
AGGCGAAAAUGGCCACAUCCGCACCGGUCAACGCCGAUGGCAACGUCGCCGAGUAGAUGAUGUUUUGCACCGGCCACGUGGUCAUCCUAGCGUUGACCACUAUCAUCGUGGAGUAGAAAA
.(((.......)))...((..(.(((((((((((.((((((.((((.((((.(((((......)))))..)))).)))).))))))...)))))))))((.......)))).)..))... ( -47.80)
>DroVir_CAF1 78002 120 + 1
AGGCAAAUAUGGCCACAUCGGCACCCGUUACCGCCGACGGCAGCGUUGCCGUAUAGAUUAUGUACUCCACCGGCCAGGUCGGCAUCUUGGCAUUCACCACAAUCAUGGUUGAGUAGAUUA
.(((((.....(((...(((((..........))))).)))....)))))(((((.....))))).......((((((.......))))))((((((((......))).)))))...... ( -37.20)
>DroGri_CAF1 71089 120 + 1
AGGCAAAUAUGGCAACAUCGGCACCAGUCACAGCCGAUGGCAACGUUGCCGUAUAGAUGACAUACUCCAAUGGCCAGCUGGGCAUCUUGGCAUUCACCACAAUCAUUGACGAGUAGAUGA
......((((((((((((((((..........))))))(....)))))))))))........(((((((((((((.....)))....(((......)))....)))))..)))))..... ( -38.40)
>DroWil_CAF1 78230 120 + 1
AGGCAAAUAUGGCCACAUCGGCUCCAGUCAGAGCCGAGGGUAAAGUGGCCGUAUAGAUGAUAUACUCCACUGGCCAAGUUUCCAUCUUGGCAUUGACCACAAUCAUAACGGAGUAAAUCA
......((((((((((.(((((((......))))))).......))))))))))...((((.((((((....((((((.......))))))((((....))))......)))))).)))) ( -47.70)
>DroMoj_CAF1 85869 120 + 1
AGGCAAAGAUGGCUACAUCGGCGCCUGUUAUGGCUGACGGCAACGUUGCCGUAUAGAUUAUGUACUCCACCGGCCAGGUGGACAUCUUGGCAUUGACCACAAUCAUCGUGGAAUAGAUGA
..((.((((((.(((...(((((((......))).((((....))))))))..))).........((((((.....)))))))))))).)).....((((.......))))......... ( -43.60)
>DroAna_CAF1 66620 120 + 1
AGGCGAAAAUCGCCACAUCCGCUCCAGUUAGCGCAGAUGGGAGCGUGGCGGAGUAGAUGAUGUUCUGGACUGGCCAGGUGGGCAUCUUGGCGUUCACCACUAUCAUCGUGGAGUAGAUAA
.((((.....))))..(((..(((((((((.(((........)))))))......((((((((..(((((..((((((.......)))))))))))..)).)))))).)))))..))).. ( -45.60)
>consensus
AGGCAAAUAUGGCCACAUCGGCACCAGUCACCGCCGAUGGCAACGUUGCCGUAUAGAUGAUGUACUCCACCGGCCAGGUGGGCAUCUUGGCAUUCACCACAAUCAUCGUGGAGUAGAUAA
.(((((.....(((...(((((..........))))).)))....)))))(((((.....))))).......((((((.......)))))).....((((.......))))......... (-22.92 = -23.98 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:36 2006