Locus 6200

Sequence ID 3L_DroMel_CAF1
Location 16,443,801 – 16,443,895
Length 94
Max. P 0.740998
window9953

overview

Window 3

Location 16,443,801 – 16,443,895
Length 94
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 74.95
Mean single sequence MFE -17.02
Consensus MFE -12.56
Energy contribution -12.92
Covariance contribution 0.36
Combinations/Pair 1.08
Mean z-score -1.21
Structure conservation index 0.74
SVM decision value 0.45
SVM RNA-class probability 0.740998
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16443801 94 - 23771897
ACUAUAUUCUG-------UAACAUUCUGUUCGAAUUUUCAAAACCACCUGAAAAAGAAAAGUAGGCGAAGGCCAUUGGACUUUCCAUGAAAAUACUAACUA
...........-------.........(((.(.(((((((.......................(((....)))..(((.....)))))))))).).))).. ( -15.70)
>DroSec_CAF1 56116 94 - 1
AUUAUAUUCUU-------UUACAUUCUGUUCGAAUUUUCAAAAUCACCUGAAACUGACAAGUAGGCGAAGGCCAUUGGACUUUCCAUGAAAUUACUAACUA
.........((-------(((......((((((..(((((........)))))..........(((....))).))))))......))))).......... ( -13.80)
>DroSim_CAF1 57342 87 - 1
AUUA--------------AUAUAUUCUGUUCGAAUUUUCAAAAUCACCUGAAAAAGCCAAGUAGGCGAAGGCCAUUGGACUUUCCAUGAAAUUACUAACUA
....--------------.........(((.(...(((((...((....)).((((((((...(((....))).)))).))))...)))))...).))).. ( -15.30)
>DroEre_CAF1 57636 98 - 1
AUACAAUUCAGCGUCUUUAGGUAAUCG-UUUUCUUUUUCAAAAUCACCUGAAAG--AAAACUAGGCGAAGGCCAUUGGACUUUCCAUGAGAACACUAGCUA
.........(((.((((..((...(((-(((((((((............)))))--)))))..(((....)))....))....))..))))......))). ( -21.70)
>DroYak_CAF1 59448 97 - 1
ACAUAAUGCACCAACUUUAGAUAUUCU-UUUUCAUUUUCAAAAUCACCUGAAAG--AA-ACCAGGCGAAGGCCAUUGGACUUUCCAUGAGAAUACUAGGCA
...............(((((.((((((-(.....((((((........))))))--..-.((((((....)))..))).........)))))))))))).. ( -18.60)
>consensus
AUUAAAUUCAG_______AGAUAUUCUGUUCGAAUUUUCAAAAUCACCUGAAAA_GAAAAGUAGGCGAAGGCCAUUGGACUUUCCAUGAAAAUACUAACUA
.................................(((((((.......................(((....)))..(((.....))))))))))........ (-12.56 = -12.92 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:35 2006