Locus 620

Sequence ID 3L_DroMel_CAF1
Location 1,811,689 – 1,811,779
Length 90
Max. P 0.622637
window955

overview

Window 5

Location 1,811,689 – 1,811,779
Length 90
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 78.35
Mean single sequence MFE -25.82
Consensus MFE -14.89
Energy contribution -14.53
Covariance contribution -0.36
Combinations/Pair 1.36
Mean z-score -1.66
Structure conservation index 0.58
SVM decision value 0.18
SVM RNA-class probability 0.622637
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1811689 90 + 23771897
UUUAUGGCCUUUCCUGGCCGGGAA-------UCGUGU-UGCUGCACUUCCCAAUUAAAAUGCAUGGCCAGGAUGGCUAAAAAGCGGGCCGAAAAGCAC
....((((((.(((((((((((((-------..((((-....))))))))).((....))....))))))))..(((....)))))))))........ ( -35.70)
>DroPse_CAF1 28175 79 + 1
UUUAAGGCCUUUCCUGGCUUG--G-------UCGUGU-CGCUGCACUUACCAAUUAAAAUGCAUGGCUAGGACAGCUCCAA---------AAAAGCAC
.....((.((.((((((((((--(-------(.((((-....))))..))))............)))))))).))..))..---------........ ( -19.50)
>DroEre_CAF1 27385 90 + 1
UUUAUGGCCUUUCCUGGCCGAGAG-------UCGUGU-UGCUGCACUUCCCAAUUAAAAUGCAUGGCUAGGACAGCUAAAAAGCGGGCCGAAAAGCAC
....((((((.(((((((((....-------.)((((-....))))..................))))))))..(((....)))))))))........ ( -28.60)
>DroYak_CAF1 27619 90 + 1
UUUAUGGCCUUUCCUGGCCGAGAG-------UCGUGU-UGCUGCACUUCCCAAUUAAAAUGCACGGCUAGGACAGCUAAAAAGCGGGCCGAAAAGCAC
....((((((.(((((((((..((-------(.....-.)))(((.((........)).))).)))))))))..(((....)))))))))........ ( -29.70)
>DroAna_CAF1 24946 83 + 1
UUUAUGGA----ACGGGCCAGGAACUCGAACUCGAGUGCGGUGCACUUCCCAAUUAAAAUGCAUGGCUAGGACAGCU----------CCG-AAAGCAC
....((((----.(...((....(((((....)))))((.(((((.((........)).))))).))..))...).)----------)))-....... ( -21.90)
>DroPer_CAF1 28989 79 + 1
UUUAAGGCCUUUCCUGGCUUG--G-------UCGUGU-CGCUGCACUUACCAAUUAAAAUGCAUGGCUAGGACAGCUCCAA---------AAAAGCAC
.....((.((.((((((((((--(-------(.((((-....))))..))))............)))))))).))..))..---------........ ( -19.50)
>consensus
UUUAUGGCCUUUCCUGGCCGGGAG_______UCGUGU_CGCUGCACUUCCCAAUUAAAAUGCAUGGCUAGGACAGCUAAAA______CCGAAAAGCAC
....(((((......)))))...................((((..((..(((...........)))..))..))))...................... (-14.89 = -14.53 +  -0.36) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:57 2006