Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,811,689 – 1,811,779 |
Length | 90 |
Max. P | 0.622637 |
Location | 1,811,689 – 1,811,779 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 78.35 |
Mean single sequence MFE | -25.82 |
Consensus MFE | -14.89 |
Energy contribution | -14.53 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.36 |
Mean z-score | -1.66 |
Structure conservation index | 0.58 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1811689 90 + 23771897 UUUAUGGCCUUUCCUGGCCGGGAA-------UCGUGU-UGCUGCACUUCCCAAUUAAAAUGCAUGGCCAGGAUGGCUAAAAAGCGGGCCGAAAAGCAC ....((((((.(((((((((((((-------..((((-....))))))))).((....))....))))))))..(((....)))))))))........ ( -35.70) >DroPse_CAF1 28175 79 + 1 UUUAAGGCCUUUCCUGGCUUG--G-------UCGUGU-CGCUGCACUUACCAAUUAAAAUGCAUGGCUAGGACAGCUCCAA---------AAAAGCAC .....((.((.((((((((((--(-------(.((((-....))))..))))............)))))))).))..))..---------........ ( -19.50) >DroEre_CAF1 27385 90 + 1 UUUAUGGCCUUUCCUGGCCGAGAG-------UCGUGU-UGCUGCACUUCCCAAUUAAAAUGCAUGGCUAGGACAGCUAAAAAGCGGGCCGAAAAGCAC ....((((((.(((((((((....-------.)((((-....))))..................))))))))..(((....)))))))))........ ( -28.60) >DroYak_CAF1 27619 90 + 1 UUUAUGGCCUUUCCUGGCCGAGAG-------UCGUGU-UGCUGCACUUCCCAAUUAAAAUGCACGGCUAGGACAGCUAAAAAGCGGGCCGAAAAGCAC ....((((((.(((((((((..((-------(.....-.)))(((.((........)).))).)))))))))..(((....)))))))))........ ( -29.70) >DroAna_CAF1 24946 83 + 1 UUUAUGGA----ACGGGCCAGGAACUCGAACUCGAGUGCGGUGCACUUCCCAAUUAAAAUGCAUGGCUAGGACAGCU----------CCG-AAAGCAC ....((((----.(...((....(((((....)))))((.(((((.((........)).))))).))..))...).)----------)))-....... ( -21.90) >DroPer_CAF1 28989 79 + 1 UUUAAGGCCUUUCCUGGCUUG--G-------UCGUGU-CGCUGCACUUACCAAUUAAAAUGCAUGGCUAGGACAGCUCCAA---------AAAAGCAC .....((.((.((((((((((--(-------(.((((-....))))..))))............)))))))).))..))..---------........ ( -19.50) >consensus UUUAUGGCCUUUCCUGGCCGGGAG_______UCGUGU_CGCUGCACUUCCCAAUUAAAAUGCAUGGCUAGGACAGCUAAAA______CCGAAAAGCAC ....(((((......)))))...................((((..((..(((...........)))..))..))))...................... (-14.89 = -14.53 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:57 2006