| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 246,864 – 246,974 |
| Length | 110 |
| Max. P | 0.509538 |
| Location | 246,864 – 246,974 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 81.12 |
| Mean single sequence MFE | -20.28 |
| Consensus MFE | -11.60 |
| Energy contribution | -12.32 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509538 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 246864 110 - 23771897 ACCAAAGAAAACAUCCCGAAAUUCAUUCAACCUUGCAUUUGGAUGAU-UCCCAUUUUCAAA--AAAACCUGUUGCUUUUACAGGUAAUAUCUGACGCCCUUAUCAGUAACACC--- ......(((((......(((..((((((((........)))))))))-))...)))))...--...((((((.......)))))).....((((........)))).......--- ( -17.00) >DroSec_CAF1 14856 115 - 1 ACCAAAGAAUACAUCCCGAAAUUCAUUCAGCCUUGCAUUUGGAUGAC-UCCCAUUUUCAAAAAAAAACCUGUUGCUUUUACAGGUAAUAGCUGACGCCCUUAUCAGCAACACUUAU ....(((....(((((..((((.((........)).)))))))))..-..................((((((.......))))))....(((((........)))))....))).. ( -20.40) >DroSim_CAF1 15275 113 - 1 ACCAAAGAAUACAUCCCGAAAUUCAUUCAGCCUUGCGUUUGGAUGAC-UCCCAUUUUCAAA--AAAACCUGUUGCUUUUACAGGUAAUAGCUGACGCCCUUAUCAGCAACACUUAU ....(((....(((((..((((.((........)).)))))))))..-.............--...((((((.......))))))....(((((........)))))....))).. ( -20.70) >DroEre_CAF1 14772 109 - 1 ACCAAAGAAUACAU--CGAAAUUCAUUCAGUCU-GCUCUUGGACGUUGUCCCAAUU--GAA--AAAACCUGUUGAUUGAACAGGUAAUAGCUGACGCCCUCAUAAGCAACACUAAC ......((((....--....)))).....(((.-(((...((((...)))).....--...--...(((((((.....)))))))...))).)))((........))......... ( -20.20) >DroYak_CAF1 14704 96 - 1 ACCAAAGAAUACAUCCCGAAAUUCAUUCAGCCU---------------UGCUGAAU--GAA--AAAACCUGUUGAUUUAACAGGUAAUAGCUGACGCCCUC-UAAGCGACACUUAC .....................((((((((((..---------------.)))))))--)))--...((((((((...))))))))..(((.((.(((....-...))).)).))). ( -23.10) >consensus ACCAAAGAAUACAUCCCGAAAUUCAUUCAGCCUUGCAUUUGGAUGAC_UCCCAUUUUCAAA__AAAACCUGUUGCUUUUACAGGUAAUAGCUGACGCCCUUAUCAGCAACACUUAC ..........................(((((........(((........))).............((((((.......))))))....))))).((........))......... (-11.60 = -12.32 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:23 2006