| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,436,716 – 16,436,809 |
| Length | 93 |
| Max. P | 0.930555 |
| Location | 16,436,716 – 16,436,809 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 77.60 |
| Mean single sequence MFE | -25.68 |
| Consensus MFE | -17.69 |
| Energy contribution | -17.75 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.930555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16436716 93 - 23771897 AAUG--CAUGGUUAUAAU----GUACAUUUUUUUCGUUUAUACAGCGUCUUCGCUGUCAGCGAAAGCAACCGUGCAAAUUGUUCACGGUGCGAAAGCGC ..((--(((((((.....----...................((((((....))))))..((....)))))))))))...........((((....)))) ( -33.00) >DroVir_CAF1 54357 88 - 1 ----AGCUUUGCCUACU------UGUUCGU-CUAACUCUUAACAGCGCCUACGUUGCCAGCGCAAGCAGCCGUGCAAGCUGUUUACGGUGCGUAAACGU ----...........((------(((.((.-((.........(((((....)))))...((....)))).)).)))))..(((((((...))))))).. ( -22.20) >DroSec_CAF1 49288 93 - 1 AAAU--AAUGGCUAUAAU----AUGUACAUUUUUCGUUUAUACAGCGGCUUCGUUGUCAGCGAAAACAACCGUGCAAAUUGUUCACGGUGCGAAAGCGU ....--..((...(((((----.(((((..((((((((...((((((....)))))).)))))))).....))))).)))))...))..((....)).. ( -23.80) >DroSim_CAF1 49443 93 - 1 AAAU--CAUGGCUAUAAU----AUGUACAUUUUUCGUUUAUACAGCGGCUUCGUUGUCAGCGAAAACAACCGUGCAAAUUGUUCACGGUGCGAAAGCGU ..((--(.(((..(((((----.(((((..((((((((...((((((....)))))).)))))))).....))))).)))))))).)))((....)).. ( -24.80) >DroEre_CAF1 50791 87 - 1 A-----CAUGGCUUUAA------UGUACAU-UUUCAUUUAUACAGCGCCUUCGCUGUCAGCGGAAGCAACCGUGCAAAUUGUUCACGGUGCGAAAGCGU (-----(((.......)------)))....-.............((((.(((((.....((....)).((((((.((....))))))))))))).)))) ( -25.60) >DroYak_CAF1 52407 93 - 1 A-----CUUGGCCUUAAUUUCAAUUUACAA-UUUCAUUUAUACAGCGCCUUCGCUGUCAGCGAAAGCAGCCGUGCAAGUUGUUCACGGUGCGAAAGCGU .-----........................-.............((((.(((((.....((....)).((((((.........))))))))))).)))) ( -24.70) >consensus A_____CAUGGCUAUAAU____AUGUACAU_UUUCGUUUAUACAGCGCCUUCGCUGUCAGCGAAAGCAACCGUGCAAAUUGUUCACGGUGCGAAAGCGU .........................................((((((....))))))..((....)).((((((.........))))))((....)).. (-17.69 = -17.75 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:33 2006