Locus 6196

Sequence ID 3L_DroMel_CAF1
Location 16,423,751 – 16,423,842
Length 91
Max. P 0.791862
window9949

overview

Window 9

Location 16,423,751 – 16,423,842
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 80.05
Mean single sequence MFE -15.58
Consensus MFE -10.34
Energy contribution -10.38
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.86
Structure conservation index 0.66
SVM decision value 0.59
SVM RNA-class probability 0.791862
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16423751 91 - 23771897
GCACAAAAAAAAAAAACAGAAAAGAUAAAUAAGUAAAAGCCUAGCACGCAAGAACUAAGAAUUUGGCAGUGCUGGCGGUAGUUAACUAAUC
.............................(((.((...(((.(((((((.(((........))).)).))))))))..)).)))....... ( -16.00)
>DroSec_CAF1 36140 80 - 1
CCGCAAAAAAAAAG-------AAGUUAAAUAAGUAAAAGCCUAGCACGCAAGAACUAAGAAUUUGGCAGUGCUGGCGGUAGUU----AAUC
..............-------........(((.((...(((.(((((((.(((........))).)).))))))))..)).))----)... ( -16.00)
>DroSim_CAF1 36384 80 - 1
GCGCAAAAAAA-----------AGAUAAAUAAGUAAAAGCCUAGCACGCAAGAACUAAGAACUUGGCAGUGCUGGCGGUAGUUUACUAAUC
...........-----------.........((((((.(((.(((((.((((.........))))...)))))))).....)))))).... ( -18.40)
>DroEre_CAF1 38114 78 - 1
GCUA--AAAA-----------AAGAUAAAUAAGUAAAAGCGUAGCACGCAAGAACUAAGAACUACUCAGUGCUGGCGGUACUUGAAUAUUU
....--....-----------.(((((..((((((...((.((((((.....................))))))))..))))))..))))) ( -15.40)
>DroYak_CAF1 37920 79 - 1
GCUA-GAAAA-----------AAGGUAAAUAAGUAAAAGCCUGGCACGCAAGAACUAAGAAUUACUCAGUGCUGGCGGAAGUAAACUAAUC
((((-(....-----------...................))))).(((.((.(((.((.....)).))).)).))).............. ( -12.10)
>consensus
GCGCAAAAAAA__________AAGAUAAAUAAGUAAAAGCCUAGCACGCAAGAACUAAGAAUUUGGCAGUGCUGGCGGUAGUUAACUAAUC
......................................(((.(((((.....................))))))))............... (-10.34 = -10.38 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:31 2006