| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,418,939 – 16,419,029 |
| Length | 90 |
| Max. P | 0.781321 |
| Location | 16,418,939 – 16,419,029 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 78.70 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -10.36 |
| Energy contribution | -11.32 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.781321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16418939 90 + 23771897 AAAUAGCCAUAGAUCAAUGCACCUGAUAGAUGCGGGAAAUGUUUGUUCUG---CUC-UGUUGUGUUGCGUUGUGUUG-----CCAGUUGCUAGUUGCUA ...((((.((.(((((((((((.(((((((.((((((........)))))---)))-))))).).))))))).))).-----...)).))))....... ( -23.70) >DroPse_CAF1 37478 92 + 1 AAAUAGCCAUAGAUCAAUGCACCUGAUAGAUGCGGGAAAUGUUUGUUCUGUUGCUGCUGCUGCUUCUGUG-----UAUGUUGCA-G-UGGCAGUGGCAG ....(((.(((((.(((.(((((((.......))))...)))))).))))).)))((..(((((.(((((-----.....))))-)-.)))))..)).. ( -33.60) >DroEre_CAF1 33106 90 + 1 AAAUAGCCAUAGAUCAAUGCACCUGAUAGAUGCGGGAAAUAUUUGUUCUG---CUG-UGUUGCGUUGAGU-----UGUGUUGCUUGUUGCUAGUUGCAA ....((((((((.((((((((....(((.(.((((((........)))))---)).-))))))))))).)-----))))..)))..((((.....)))) ( -23.00) >DroAna_CAF1 30357 89 + 1 AAAUAGCCAUAGAUCAAUGCACCUGAUAGAUGCGGGAAAUGUUUGUUCUA---CUGCUGUUGCUUGUAGC-------UGUUGCUGGUUGGUAACAGCUA .((((((..((((.(((.(((((((.......))))...)))))).))))---..)))))).....((((-------(((((((....))))))))))) ( -29.70) >DroPer_CAF1 39599 89 + 1 AAAUAGCCAUAGAUCAAUGCACCUGAUAGAUGCGGGAAAUGUUUGUUCUG---CUGCUGCUGCUUCUGUG-----GAUGUUGCA-G-UGGCAGUGGCAG .....(((..(((.(((.(((((((.......))))...)))))).)))(---((((..((((.((....-----))....)))-)-..)))))))).. ( -31.00) >consensus AAAUAGCCAUAGAUCAAUGCACCUGAUAGAUGCGGGAAAUGUUUGUUCUG___CUGCUGUUGCUUCUAGG_____UAUGUUGCA_GUUGGUAGUGGCAA ....((...((((.(((.(((((((.......))))...)))))).))))...))(((((((((........................))))))))).. (-10.36 = -11.32 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:30 2006