Locus 6192

Sequence ID 3L_DroMel_CAF1
Location 16,401,908 – 16,402,017
Length 109
Max. P 0.901044
window9943

overview

Window 3

Location 16,401,908 – 16,402,017
Length 109
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 77.15
Mean single sequence MFE -31.37
Consensus MFE -20.71
Energy contribution -20.93
Covariance contribution 0.23
Combinations/Pair 1.07
Mean z-score -1.85
Structure conservation index 0.66
SVM decision value 1.02
SVM RNA-class probability 0.901044
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16401908 109 - 23771897
ACCUGCGGUGUAGCAAUGGAUCUGUGGAGCUAUAGCCUACGGAACAGCUAUGUACUAUGUGGAGCCGUGGUGCUAUGGUGCUAUGGUGCUAUGGGGCUAUGGUGCUUUG
....(((.((((((.((((..((((((.((((((((((((((.....((((((...))))))..)))))).)))))))).))))))..))))...)))))).))).... ( -43.50)
>DroSec_CAF1 16881 84 - 1
ACCUGCGAUGGAGCAAUGGAUCUGUGGAGCUAUAGCCUACAAAACAGCUAUGUAC-------------------------CUAUGGAGCUAUGAUGCUAUGGUGCUAUG
....(((....((((((((.(((((((...((((((..........))))))...-------------------------))))))).))))..))))....))).... ( -20.80)
>DroSim_CAF1 16896 84 - 1
ACCUGCGGUGCAGCAAUGGAUCUGUGGAGCUAUAGCCUACGGAGCAGCUAUGUAC-------------------------CUAUGGAGCUAUGGUGCUAUGGUGCUAUG
.((...((((((....((..(((((((.((....))))))))).))....)))))-------------------------)...))...(((((..(....)..))))) ( -29.80)
>consensus
ACCUGCGGUGCAGCAAUGGAUCUGUGGAGCUAUAGCCUACGGAACAGCUAUGUAC_________________________CUAUGGAGCUAUGGUGCUAUGGUGCUAUG
.(((((......)))..)).(((((((.((....)))))))))(((....)))............................(((((..(((((....)))))..))))) (-20.71 = -20.93 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:25 2006