Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,401,254 – 16,401,348 |
Length | 94 |
Max. P | 0.999283 |
Location | 16,401,254 – 16,401,348 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -26.31 |
Consensus MFE | -21.34 |
Energy contribution | -22.59 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.04 |
Mean z-score | -2.67 |
Structure conservation index | 0.81 |
SVM decision value | 2.38 |
SVM RNA-class probability | 0.993145 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16401254 94 + 23771897 UGAGUUUCUGAG--------UUUCUAAGUUUCCAGAGUCUCUGGUUCUCUGGAUAUCUGAAUAUCUGACUAUCUGAGUUCCAGAGUUUCUCAGUUUCGGUCU .(((...(((((--------.((((........)))).((((((..(((.(((((((.(.....).)).))))))))..))))))...))))).)))..... ( -25.60) >DroSec_CAF1 16229 93 + 1 UGAGUUGCUGAG--------UUUCUAAGUUUCC-GAGUCUCUGGUUCUCUGGAUAUCUGAAUAUCUGGAUAUCUGAGUUCCAGAGUUUCUCAGUUUCGGUCU ...(..((((((--------.............-....((((((..(((.((((((((........)))))))))))..))))))...))))))..)..... ( -30.15) >DroSim_CAF1 16256 101 + 1 UGAGUUGCUGAGUUUCUGAGUUUCUAAGUUUCC-AAGUCUUUGGUUCUCUGGAUAUCUGAAUAUCUGGAUAUCUGAGUUCCACAGUUUCUCAGUUUCGGUCG ...(..((((((...(((.......(((.....-....)))(((..(((.((((((((........)))))))))))..))))))...))))))..)..... ( -27.10) >DroEre_CAF1 18017 77 + 1 UGAGUUUCUGAG--------AUUCUGAGUUUCC-GAGUCUCUGGUUCUCUGGAUA----------------UCUGAGCUCCAGAGUUUCUCAGUUUCGGUCU .......(((((--------(..(((((.....-(((.((((((..(((.((...----------------.)))))..))))))))))))))))))))... ( -22.40) >consensus UGAGUUGCUGAG________UUUCUAAGUUUCC_GAGUCUCUGGUUCUCUGGAUAUCUGAAUAUCUGGAUAUCUGAGUUCCAGAGUUUCUCAGUUUCGGUCU .(((...(((((......................(((.((((((..(((.((((((((........)))))))))))..)))))))))))))).)))..... (-21.34 = -22.59 + 1.25)
Location | 16,401,254 – 16,401,348 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -23.23 |
Consensus MFE | -20.30 |
Energy contribution | -21.30 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.05 |
Mean z-score | -3.51 |
Structure conservation index | 0.87 |
SVM decision value | 3.48 |
SVM RNA-class probability | 0.999283 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16401254 94 - 23771897 AGACCGAAACUGAGAAACUCUGGAACUCAGAUAGUCAGAUAUUCAGAUAUCCAGAGAACCAGAGACUCUGGAAACUUAGAAA--------CUCAGAAACUCA .........(((((...(((((((..((.((((......))))..))..)))))))..((((.....))))...........--------)))))....... ( -24.70) >DroSec_CAF1 16229 93 - 1 AGACCGAAACUGAGAAACUCUGGAACUCAGAUAUCCAGAUAUUCAGAUAUCCAGAGAACCAGAGACUC-GGAAACUUAGAAA--------CUCAGCAACUCA .........(((((...((((((..(((.((((((..........))))))..)))..))))))....-(....).......--------)))))....... ( -25.20) >DroSim_CAF1 16256 101 - 1 CGACCGAAACUGAGAAACUGUGGAACUCAGAUAUCCAGAUAUUCAGAUAUCCAGAGAACCAAAGACUU-GGAAACUUAGAAACUCAGAAACUCAGCAACUCA .........(((((...((.(((..(((.((((((..........))))))..)))..))).)).((.-(....)..))...)))))............... ( -19.90) >DroEre_CAF1 18017 77 - 1 AGACCGAAACUGAGAAACUCUGGAGCUCAGA----------------UAUCCAGAGAACCAGAGACUC-GGAAACUCAGAAU--------CUCAGAAACUCA .........((((((..((((((..(((...----------------......)))..))))))....-(....)......)--------)))))....... ( -23.10) >consensus AGACCGAAACUGAGAAACUCUGGAACUCAGAUAUCCAGAUAUUCAGAUAUCCAGAGAACCAGAGACUC_GGAAACUUAGAAA________CUCAGAAACUCA .........(((((...((((((..(((.((((((..........))))))..)))..)))))).....(....)...............)))))....... (-20.30 = -21.30 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:24 2006