Locus 6190

Sequence ID 3L_DroMel_CAF1
Location 16,400,182 – 16,400,278
Length 96
Max. P 0.599324
window9940

overview

Window 0

Location 16,400,182 – 16,400,278
Length 96
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 80.53
Mean single sequence MFE -26.67
Consensus MFE -9.84
Energy contribution -10.15
Covariance contribution 0.31
Combinations/Pair 1.21
Mean z-score -2.99
Structure conservation index 0.37
SVM decision value 0.13
SVM RNA-class probability 0.599324
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16400182 96 - 23771897
UAGCCAA----GUGUAAUAGCUGUGGCCCAGA-AGUGGAAUCACUGCAGCG---------UGUUCCCUUCGAGGCGGAAGCUAAUAAUUAACACAGAAAUA---AAAAAAAAA
.......----(((((((((((.(.(((..((-((.((((.(((......)---------))))))))))..))).).)))))....)).)))).......---......... ( -27.10)
>DroSec_CAF1 15166 96 - 1
UAGCCAA----GUGUAAUAGCUCUGGCCCAGA-AGUGGAAUCACUGCAGCG---------UGUUCCCUUCGAGGCGGAAGCUAAUAAUUAACACAGAAAUA---UAAAAAAAA
.......----(((((((((((.(.(((..((-((.((((.(((......)---------))))))))))..))).).)))))....)).)))).......---......... ( -27.10)
>DroSim_CAF1 15200 96 - 1
UAGCCAA----GUGUAAUAGCUCUGGCCCAGA-AGUGGAAUCACUGCAGCG---------UGUUCCCUUCGAGGCGGAAGCUAAUAAUUAACACAGAAAUA---UAAAAAAAA
.......----(((((((((((.(.(((..((-((.((((.(((......)---------))))))))))..))).).)))))....)).)))).......---......... ( -27.10)
>DroEre_CAF1 17001 91 - 1
UAGCCAA----GUGUAAUAGCUCUGCCCCAGA-AGAGGAAUCACUGCAGCG---------UGUUCCCUUCGGAGCGGAAGCUAAUAAUUAACACAGAAAUA--------AAAA
.......----(((((((((((((((.((.((-((.((((.(((......)---------)))))))))))).)))).)))))....)).)))).......--------.... ( -28.40)
>DroYak_CAF1 15605 91 - 1
UAGCCAA----GUGUAAUGGCUCUGCCCCAGA-AGAGGAAUCACUGCAGCG---------UGUUCCCUUCGAAGCGGAAGCUAAUAAUUAACACAGAAAUA--------AAAA
..((((.----......))))((((.....((-((.((((.(((......)---------))))))))))..(((....)))...........))))....--------.... ( -25.60)
>DroPer_CAF1 18814 113 - 1
UAGCCUGCCCUUUGCAUCGGCUCUCCCGUUUAUCAAAGAAUCACUGCAGCAGCCACAUGCUGCCCUUUUCCAAGCGGAAGCUUAUAAUUAACACAGAAAAAAUACAGACAGAA
.(((((((.....)))..)))).....((((......(((.....((((((......))))))....))).((((....))))......................)))).... ( -24.70)
>consensus
UAGCCAA____GUGUAAUAGCUCUGCCCCAGA_AGAGGAAUCACUGCAGCG_________UGUUCCCUUCGAAGCGGAAGCUAAUAAUUAACACAGAAAUA____AAAAAAAA
...........((((....((..((..(((.....)))...))..)).........................(((....)))........))))................... ( -9.84 = -10.15 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:22 2006