Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,392,382 – 16,392,480 |
Length | 98 |
Max. P | 0.999830 |
Location | 16,392,382 – 16,392,480 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -29.90 |
Consensus MFE | -28.46 |
Energy contribution | -28.30 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.10 |
Mean z-score | -2.45 |
Structure conservation index | 0.95 |
SVM decision value | 4.19 |
SVM RNA-class probability | 0.999830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16392382 98 + 23771897 GUCUACUGCCAGCUUUCUGGCGUGGAUGAAGUGCGAAAUUGACGCUCACCCAGUUGAAUUGUUAUACCCAUCCACAUUCCAUCAUCCCAUGUAGACCA ((((((.(((((....)))))(((((((..(((..(..(..((.........))..)....)..))).)))))))...............)))))).. ( -29.10) >DroSec_CAF1 7430 98 + 1 GUCUACUGCCAGCUUUCUGGCGUGGAUGAAGUGCGAAAUUGACGCUCACCCAGUUGGAUUGUUAUACCCAUCCACAUUCCAUCAUCCCAUGUGGACCA ((((((.(((((....)))))(.((((((.(.(((.......))).).......((((.(((...........))).)))))))))))..)))))).. ( -31.50) >DroSim_CAF1 7495 98 + 1 GUCUACUGCCAGCUUUCUGGCGUGGAUGAAGUGCGAAAUUGACGCUCACCCAGUUGGAUUGUUAUACCCAUCCACAUUCCAUCAUCCCAUGUGGACCA ((((((.(((((....)))))(.((((((.(.(((.......))).).......((((.(((...........))).)))))))))))..)))))).. ( -31.50) >DroEre_CAF1 9511 98 + 1 GUCUACUGCCAGCUUUCUGGCGUGGAUGAAGUGCGAAAUUGACGCUCCCCCAGUUGGAUUGUUAUACCCAUCCACAUUCCAUCAUCCCAGGCGGACCA (((..(((((((....)))))(.((((((.(.(((.......))).).......((((.(((...........))).))))))))))).))..))).. ( -28.30) >DroYak_CAF1 7797 98 + 1 GUUUACUGCCAGCUUUCUGGCAUGGAUGAAGUGCGAAAUUGACGCUCCCCCAGUUGGAUUGUUAUAGCCAUCCACAUUCCAUCAUCCCAUGUAGACCA ((((((((((((....)))))).((((((.(.(((.......))).).....((.((((.((....)).))))))......))))))...)))))).. ( -29.10) >consensus GUCUACUGCCAGCUUUCUGGCGUGGAUGAAGUGCGAAAUUGACGCUCACCCAGUUGGAUUGUUAUACCCAUCCACAUUCCAUCAUCCCAUGUGGACCA ((((((((((((....)))))).((((((.(.(((.......))).).......((((.(((...........))).))))))))))...)))))).. (-28.46 = -28.30 + -0.16)
Location | 16,392,382 – 16,392,480 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -31.26 |
Consensus MFE | -28.16 |
Energy contribution | -28.04 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.58 |
Structure conservation index | 0.90 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16392382 98 - 23771897 UGGUCUACAUGGGAUGAUGGAAUGUGGAUGGGUAUAACAAUUCAACUGGGUGAGCGUCAAUUUCGCACUUCAUCCACGCCAGAAAGCUGGCAGUAGAC ..((((((...............((((((((((......((((....))))..(((.......))))).))))))))(((((....))))).)))))) ( -32.30) >DroSec_CAF1 7430 98 - 1 UGGUCCACAUGGGAUGAUGGAAUGUGGAUGGGUAUAACAAUCCAACUGGGUGAGCGUCAAUUUCGCACUUCAUCCACGCCAGAAAGCUGGCAGUAGAC ..((((((((...........))))))))((((......)))).((((((((((((.......)))...))))))..(((((....)))))))).... ( -32.40) >DroSim_CAF1 7495 98 - 1 UGGUCCACAUGGGAUGAUGGAAUGUGGAUGGGUAUAACAAUCCAACUGGGUGAGCGUCAAUUUCGCACUUCAUCCACGCCAGAAAGCUGGCAGUAGAC ..((((((((...........))))))))((((......)))).((((((((((((.......)))...))))))..(((((....)))))))).... ( -32.40) >DroEre_CAF1 9511 98 - 1 UGGUCCGCCUGGGAUGAUGGAAUGUGGAUGGGUAUAACAAUCCAACUGGGGGAGCGUCAAUUUCGCACUUCAUCCACGCCAGAAAGCUGGCAGUAGAC ..((((.....))))........((((((((((......)))).....((((.(((.......))).))))))))))(((((....)))))....... ( -30.80) >DroYak_CAF1 7797 98 - 1 UGGUCUACAUGGGAUGAUGGAAUGUGGAUGGCUAUAACAAUCCAACUGGGGGAGCGUCAAUUUCGCACUUCAUCCAUGCCAGAAAGCUGGCAGUAAAC ..((.(((...((((((((((.(((...........))).)))).........(((.......)))...)))))).((((((....))))))))).)) ( -28.40) >consensus UGGUCCACAUGGGAUGAUGGAAUGUGGAUGGGUAUAACAAUCCAACUGGGUGAGCGUCAAUUUCGCACUUCAUCCACGCCAGAAAGCUGGCAGUAGAC ..(((.((...((((((((((.(((...........))).)))).........(((.......)))...))))))..(((((....))))).)).))) (-28.16 = -28.04 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:21 2006