| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,383,718 – 16,383,830 |
| Length | 112 |
| Max. P | 0.680931 |
| Location | 16,383,718 – 16,383,830 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 74.78 |
| Mean single sequence MFE | -32.02 |
| Consensus MFE | -22.66 |
| Energy contribution | -23.38 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.680931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16383718 112 - 23771897 UAUUAAAAGCUUAUAUAUCUACA-UUUAUAGUUCCCGGCUUGGCUGGUGGCAAGAUGUCCUCUUCCGAGGAGGACUCAAAGAUCGAUCUUCUGGACUCCCCGGCCAACGUGAA ......(((((..((((......-..))))......)))))((((((.((...((.(((((((.....)))))))))..(((.......))).....))))))))........ ( -29.80) >DroGri_CAF1 1836 103 - 1 ------AUGCUAC--CUUUUUU--CAAUUAGUGCCUGGCUUGGCUGGCGGCAAGAUGUCUUCCUCGGAGGAGGACUCGAAGAUUGAUCUGCUCGACUCGCCCGCCAACGUCAA ------.......--.......--...........(((((((((.(((((......(((((((.....)))))))(((((((....)))..)))).))))).))))).)))). ( -33.20) >DroEre_CAF1 973 112 - 1 AGUGGAAUCCUCAUAUAUCUACA-UUUUUAGUACCCGGUUUGGCUGGUGGCAAAAUGUCCUCUUCCGAGGAGGACUCCAAGAUCGAUCUUUUGGACUCGCCGGCCAACGUGAA .(((((...........))))).-...........((..(((((((((((......(((((((.....)))))))(((((((......))))))).)))))))))))..)).. ( -37.40) >DroYak_CAF1 971 112 - 1 CCUUCAAACCUUAUAUAUCUACA-UUUUUAGUUCCCGGCUUGGCUGGUGGCAAGAUGUCAUCUUCCGAGGAAGACUCCAAGAUCGACCUCUUAGACUCUCCGGCCAACGUGAA .......................-.......(((.((...(((((((.(((((((.((((((((..(((.....))).))))).))).)))).).))..))))))).)).))) ( -27.80) >DroMoj_CAF1 1702 109 - 1 C----GUAUCUAAUUCAAUUCUGCUUGGCAGUGCCUGGCCUGGCUGGUGGCAAGAUGUCUUCCUCCGAGGAGGACUCGAAGAUAGAUCUCCUCGACUCGCCGGCUAAUGUGAA .----........((((.....(((.(((...))).))).((((((((((......(((((((.....)))))))((((.((......)).)))).))))))))))...)))) ( -35.70) >DroAna_CAF1 976 108 - 1 -AUU---UCCUUAUGGGCUUCUA-CUUUCAGUUCCUGGACUUGCUGGUGGCAAGAUGUCCUCCUCCGAGGAAGACUCCAAGAUCGACCUGCUGGACUCGCCCGCCAAUGUCAA -...---.......((((.....-......(.((.(((((((((.....)))))..(((.(((.....))).))))))).)).)..((....))....))))........... ( -28.20) >consensus __UU_AAACCUUAUAUAUCUACA_UUUUUAGUUCCCGGCUUGGCUGGUGGCAAGAUGUCCUCCUCCGAGGAGGACUCCAAGAUCGAUCUCCUGGACUCGCCGGCCAACGUGAA ........................................((((((((((......(((((((.....)))))))((((((......))..)))).))))))))))....... (-22.66 = -23.38 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:11 2006