Locus 6182

Sequence ID 3L_DroMel_CAF1
Location 16,375,535 – 16,375,636
Length 101
Max. P 0.784642
window9925

overview

Window 5

Location 16,375,535 – 16,375,636
Length 101
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 82.29
Mean single sequence MFE -26.81
Consensus MFE -17.85
Energy contribution -18.53
Covariance contribution 0.68
Combinations/Pair 1.17
Mean z-score -1.98
Structure conservation index 0.67
SVM decision value 0.57
SVM RNA-class probability 0.784642
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16375535 101 + 23771897
UGGAUGGAGUGAGAGCACAGUUGCAUGGAUCUCGAAGAUGCUAAGAAAAGAUGCAUGCAGCGCAUAGAGAUGAC---------------AACUUUUCGUGCAGUGCAAAAAGAAGU
..............((((.((((((((.((((................)))).))))))))((((.((((....---------------....)))))))).)))).......... ( -28.79)
>DroSec_CAF1 5156 101 + 1
UGGAUGGAGUGGGAGCACAGUUGCAUGGAUCUCAAAGAUGCUAACAAAAGAUGCAUGCAGCGCAUAGAGAUGAC---------------AACUUUUCGUGCAGUGCAAAAAGAAGU
..............((((.((((((((.((((................)))).))))))))((((.((((....---------------....)))))))).)))).......... ( -28.79)
>DroSim_CAF1 5198 101 + 1
UGGAUGGAGUGGGAGCACAGUUGCAUGGAUCUCAAAGAUGCUAACAAAAGAUGCAUGCAGCGCAUAGAGAUGAC---------------AACUUUUCGUGCAGUGCAAAAAGAAGU
..............((((.((((((((.((((................)))).))))))))((((.((((....---------------....)))))))).)))).......... ( -28.79)
>DroEre_CAF1 5082 114 + 1
UGGAAGGAGUG--AGCUUAGUUGCAGGGAUUUUAAAGAUGCUAACAAAAGAUGCAUGCACCAAAUAGAGAUGACAGUGCUGGUAUCAUCAAAUUUUCGCUCAGUGCAAAAAGAAGU
((.(..(((((--((....((((((.............))).)))....(((((..((((...............))))..)))))........)))))))..).))......... ( -23.08)
>DroYak_CAF1 29926 110 + 1
UGGAUUGAGUG--AGCAUAGUCGCAUGGAUUUUAAAGAUGCAAACAAAAGGCGCAUGCACCGAAUAGAGAUAAAAGUGC----AUCAUUAACUUUUCGCUCAGUGCAAAAAGAAGU
((.((((((((--(((......)).......((((.((((((.......((.(....).))...((....))....)))----))).))))....))))))))).))......... ( -24.60)
>consensus
UGGAUGGAGUG_GAGCACAGUUGCAUGGAUCUCAAAGAUGCUAACAAAAGAUGCAUGCAGCGCAUAGAGAUGAC_______________AACUUUUCGUGCAGUGCAAAAAGAAGU
..............((((.((((((((.((((................)))).))))))))((((.((((.......................)))))))).)))).......... (-17.85 = -18.53 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:08 2006