Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,802,866 – 1,802,965 |
Length | 99 |
Max. P | 0.877256 |
Location | 1,802,866 – 1,802,965 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 82.27 |
Mean single sequence MFE | -21.13 |
Consensus MFE | -14.07 |
Energy contribution | -13.97 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.36 |
Structure conservation index | 0.67 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1802866 99 + 23771897 AUCCGGAGUGCAUCUAAUACCAUUUGGCAUACAAAUCCGAGGAUACACACUUUAAAAUCAAUCUGAAAUGGAAAGUGUAUCUUCUUAUAUAAACAGAUA (((.(((.((.((((((......)))).)).))..)))((((((((((..((((...((.....))..))))..))))))))))...........))). ( -18.70) >DroSec_CAF1 18243 84 + 1 AUC-GGAG------------CGUUUGGCACCCAAAUCCGAGGAUAC--ACUUCAUAAUCUGUUUGAAAUGGAGAGUGUAUCUUCUUAUACAAACAGAUA .((-(((.------------..(((((...))))))))))......--........(((((((((....(((((.....))))).....))))))))). ( -23.30) >DroSim_CAF1 18300 84 + 1 AUC-GGAG------------CGUUUGGCAUACAAAUCCGAGGAUAC--ACUUCAAAAUCAGUUUGAAAUGGAGAGUGUAUCUUCUUAUACAAACAGAUA (((-(((.------------..((((.....)))))))((((((((--(((((....((.....))....)).)))))))))))...........))). ( -21.40) >consensus AUC_GGAG____________CGUUUGGCAUACAAAUCCGAGGAUAC__ACUUCAAAAUCAGUUUGAAAUGGAGAGUGUAUCUUCUUAUACAAACAGAUA (((.(................(((((.....)))))..((((((((...(((((...((.....))..)))))...)))))))).........).))). (-14.07 = -13.97 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:53 2006