Locus 618

Sequence ID 3L_DroMel_CAF1
Location 1,802,866 – 1,802,965
Length 99
Max. P 0.877256
window951

overview

Window 1

Location 1,802,866 – 1,802,965
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 82.27
Mean single sequence MFE -21.13
Consensus MFE -14.07
Energy contribution -13.97
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -2.36
Structure conservation index 0.67
SVM decision value 0.90
SVM RNA-class probability 0.877256
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1802866 99 + 23771897
AUCCGGAGUGCAUCUAAUACCAUUUGGCAUACAAAUCCGAGGAUACACACUUUAAAAUCAAUCUGAAAUGGAAAGUGUAUCUUCUUAUAUAAACAGAUA
(((.(((.((.((((((......)))).)).))..)))((((((((((..((((...((.....))..))))..))))))))))...........))). ( -18.70)
>DroSec_CAF1 18243 84 + 1
AUC-GGAG------------CGUUUGGCACCCAAAUCCGAGGAUAC--ACUUCAUAAUCUGUUUGAAAUGGAGAGUGUAUCUUCUUAUACAAACAGAUA
.((-(((.------------..(((((...))))))))))......--........(((((((((....(((((.....))))).....))))))))). ( -23.30)
>DroSim_CAF1 18300 84 + 1
AUC-GGAG------------CGUUUGGCAUACAAAUCCGAGGAUAC--ACUUCAAAAUCAGUUUGAAAUGGAGAGUGUAUCUUCUUAUACAAACAGAUA
(((-(((.------------..((((.....)))))))((((((((--(((((....((.....))....)).)))))))))))...........))). ( -21.40)
>consensus
AUC_GGAG____________CGUUUGGCAUACAAAUCCGAGGAUAC__ACUUCAAAAUCAGUUUGAAAUGGAGAGUGUAUCUUCUUAUACAAACAGAUA
(((.(................(((((.....)))))..((((((((...(((((...((.....))..)))))...)))))))).........).))). (-14.07 = -13.97 +  -0.11) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:53 2006