Locus 6179

Sequence ID 3L_DroMel_CAF1
Location 16,363,234 – 16,363,325
Length 91
Max. P 0.544429
window9918

overview

Window 8

Location 16,363,234 – 16,363,325
Length 91
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 78.06
Mean single sequence MFE -23.10
Consensus MFE -13.94
Energy contribution -13.94
Covariance contribution 0.00
Combinations/Pair 1.19
Mean z-score -1.44
Structure conservation index 0.60
SVM decision value 0.02
SVM RNA-class probability 0.544429
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16363234 91 - 23771897
UACACUUGUAUUGAAUUCCUUUUCAGGACAAGAACUUCACCUUUGGUCCGGCAAUCAUGUCCAAGUUGAUGGAUUACUUUGAGCUGGAUGG---------
....(((((.(((((......))))).))))).............(((((((..(((.(((((......))))).....))))))))))..--------- ( -24.80)
>DroPse_CAF1 6882 87 - 1
----UAUCUCUCUCUCUCCUUUUAAGGACAAAAACUUCACCUUUGGUCCUGCCAUUAUGUCCAAAAUGAUGGAUUACUUCGAGCUGGAUGG---------
----(((((..(((..........(((((.(((........))).))))).(((((((.......)))))))........)))..))))).--------- ( -19.50)
>DroSec_CAF1 3481 91 - 1
UACACUUGUAUUGAUUCCCUUUUCAGGACAAGAACUUCACCUUCGGUCCGGCCAUCAUGUCCAAGUUGAUGGAUUACUUUGAGCUGGAUGG---------
....(((((.((((........)))).)))))...........(.(((((((((....(((((......))))).....)).))))))).)--------- ( -25.70)
>DroSim_CAF1 3486 91 - 1
UACACUUGUAUUGAUUCCCUUUUCAGGACAAGAACUUCACCUUCGGUCCGGCCAUCAUGUCCAAGUUGAUGGAUUACUUUGAGCUGGAUGG---------
....(((((.((((........)))).)))))...........(.(((((((((....(((((......))))).....)).))))))).)--------- ( -25.70)
>DroEre_CAF1 3433 86 - 1
----CAAGUAUUGAUUCCC-UUCCAGGACAAGAACUUCACCUUUGGUCCGGCAAUCAUGUCCAAGUUGAUGGAUUACUUUGAGCUGGAUGG---------
----.((((.(((..(((.-.....))))))..))))........(((((((..(((.(((((......))))).....))))))))))..--------- ( -19.50)
>DroMoj_CAF1 11447 95 - 1
UUC---ACAU--UUUCCUCUCCUCAGGAUAAAAACUUUUCCUAUGGUCCGGCUAUAAUGUCCAAGCUGAUGGACUACUAUGAGCUGUAUGGUGAGUGAGC
...---.(((--((.((...((..((((..........))))..))..((((((((..(((((......)))))...))).)))))...)).)))))... ( -23.40)
>consensus
UAC_CUUGUAUUGAUUCCCUUUUCAGGACAAGAACUUCACCUUUGGUCCGGCCAUCAUGUCCAAGUUGAUGGAUUACUUUGAGCUGGAUGG_________
.................(((....)))................(.(((((((......(((((......)))))........))))))).)......... (-13.94 = -13.94 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:01 2006