Locus 6175

Sequence ID 3L_DroMel_CAF1
Location 16,357,840 – 16,357,930
Length 90
Max. P 0.884259
window9911

overview

Window 1

Location 16,357,840 – 16,357,930
Length 90
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.46
Mean single sequence MFE -24.32
Consensus MFE -12.68
Energy contribution -13.68
Covariance contribution 1.00
Combinations/Pair 1.22
Mean z-score -2.00
Structure conservation index 0.52
SVM decision value 0.93
SVM RNA-class probability 0.884259
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16357840 90 - 23771897
AAAUCGCGUCUCUAAACUGAUAAGCGGACUUAAUUGCUAUCAACUUCGAGUUGGAUGACU-----------CUGUCACUUCGGCUCA--------------CU-GCG----AAAACAAUC
...((((..........(((((.((((......))))))))).....((((((((((((.-----------..)))).)))))))).--------------..-)))----)........ ( -23.20)
>DroGri_CAF1 38357 109 - 1
GAGCUACGACUCUAAACUGAUAAGCGGUUUUAAUUGCUCU-AUCUACGACUUCAACAGCG----------GUUGUCAGUUCGCAUUUGUUCAAACCGCCUAUUGGCGACUAAAACCAAUU
((((((((((........((((((((((....)))))).)-)))..((.((.....))))----------))))).)))))..............((((....))))............. ( -24.40)
>DroSec_CAF1 40202 90 - 1
AAAUCGCGUCUCUAAACUGAUAAGCGCACUUAAUUGCUAUCAACUUCGAGUUGGAUGACU-----------CUGUCACUUCGGCUCA--------------CU-GCG----AAAACAAUC
...((((..........(((((.(((........)))))))).....((((((((((((.-----------..)))).)))))))).--------------..-)))----)........ ( -22.90)
>DroSim_CAF1 43900 90 - 1
AAAUCGCGUCUCUAAACUGAUAAGCGCACUUAAUUGCUAUCAACUUCGAGUUGGAUGACU-----------CUGUCACUUCGGCUCA--------------CU-GCG----AAAACAAUC
...((((..........(((((.(((........)))))))).....((((((((((((.-----------..)))).)))))))).--------------..-)))----)........ ( -22.90)
>DroEre_CAF1 40314 101 - 1
GAAUCGAGUCUCUAAACUGAUAAGCGGACUUAAUUGCUAUCAACUUCGAGUUGGAUGACUUGGCCGCCCGCCUGUCACUUCAGCUCA--------------CU-GCG----AAAACAAUC
...((((((........(((((.((((......))))))))).....((((((((((((..(((.....))).)))).)))))))))--------------))-.))----)........ ( -28.20)
>consensus
AAAUCGCGUCUCUAAACUGAUAAGCGGACUUAAUUGCUAUCAACUUCGAGUUGGAUGACU___________CUGUCACUUCGGCUCA______________CU_GCG____AAAACAAUC
....(((..........(((((.(((........)))))))).....((((((((((((..............)))).))))))))..................)))............. (-12.68 = -13.68 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:53 2006