Locus 6174

Sequence ID 3L_DroMel_CAF1
Location 16,357,498 – 16,357,609
Length 111
Max. P 0.733635
window9910

overview

Window 0

Location 16,357,498 – 16,357,609
Length 111
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.99
Mean single sequence MFE -25.02
Consensus MFE -14.77
Energy contribution -15.77
Covariance contribution 1.00
Combinations/Pair 1.12
Mean z-score -2.52
Structure conservation index 0.59
SVM decision value 0.43
SVM RNA-class probability 0.733635
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16357498 111 + 23771897
UGUGGAGAUAUUGGUAUUUAGCUAUA--------UCUGGGAAGACAGAAAGUUUGCUAAAAUCCUUAUCAUUUAAAUU-UUAUAAACAGUUGUGAAUGAAAUGAUAAUAUACCGACAUUA
......(((.((((((((((((....--------((((......))))......))))))....(((((((((....(-((((((....)))))))..)))))))))..)))))).))). ( -25.30)
>DroSec_CAF1 39878 111 + 1
UUAGGAGAUAUUGGUAUUUAGCCAUA--------UCUGGGAAGACAGAAAGUUUGCUAAAAUCCUUAUCAUUUAAAUU-UUAUAAACAGUUGUGAAUGAAAUGGUAAUAUACCUACAUUA
.((((.......((..((((((....--------((((......))))......))))))..))(((((((((....(-((((((....)))))))..)))))))))....))))..... ( -23.20)
>DroSim_CAF1 43576 111 + 1
UUAGGAGAUAUUGGUAUUUAGCCAUA--------ACUGGGAAGACAGAAAGUUUGCUAAAAUCCUUAUCAUUUAAAUU-UUAUAAACAAUUGUGAAUGAAAUGAUAAUAUACCGACAUUA
......(((.((((((((((((...(--------(((.(.....)....)))).))))))....(((((((((....(-((((((....)))))))..)))))))))..)))))).))). ( -22.70)
>DroEre_CAF1 39977 113 + 1
UUCGGAAA-----GUAUUAAGCCAGAAAGUUCUGUCUG--GAGACAGAAAGACAGCUAAUAUCGUUAUCAUUUAAAUUUUUAUAAACAGUUAUGAAUGAAGUGAUAAUAUACCGACAUUA
.((((...-----((((((.((((((....))))((((--....))))......)))))))).((((((((((.....(((((((....)))))))..))))))))))...))))..... ( -28.90)
>consensus
UUAGGAGAUAUUGGUAUUUAGCCAUA________UCUGGGAAGACAGAAAGUUUGCUAAAAUCCUUAUCAUUUAAAUU_UUAUAAACAGUUGUGAAUGAAAUGAUAAUAUACCGACAUUA
......(((.((((((((((((............((((......))))......))))).....(((((((((......((((((....))))))...))))))))).))))))).))). (-14.77 = -15.77 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:52 2006