Locus 6173

Sequence ID 3L_DroMel_CAF1
Location 16,355,010 – 16,355,112
Length 102
Max. P 0.876567
window9909

overview

Window 9

Location 16,355,010 – 16,355,112
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 83.09
Mean single sequence MFE -26.92
Consensus MFE -18.80
Energy contribution -19.52
Covariance contribution 0.72
Combinations/Pair 1.17
Mean z-score -2.15
Structure conservation index 0.70
SVM decision value 0.90
SVM RNA-class probability 0.876567
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16355010 102 - 23771897
GGAGGCCAUCGGACUGCUGUUGAACAGCGGUUCGAUCUGUGAUUCAUUAUCCGAAUUAUUGUCCUCCAUUGAGACGUUACUAAAAUGCGAAUAAUUUUUCCA
(((((.(((((((((((((.....)))))))))))...(((((((.......))))))))).))))).......(((.........)))............. ( -32.20)
>DroSec_CAF1 37497 102 - 1
GGAGGCCAUCGGACUGCUGUUGAACAGCGGAUCCAUCUGUAAUUCAUUAUCCGAAUUAUUGUCCCCCAUUGAGACGAUGCUAAUAUGCGAAAAAUUUCUCCA
(((((..((((((((((((.....)))))).)))....(((((((.......))))))).((((......).))))))((......))........))))). ( -27.40)
>DroSim_CAF1 41059 102 - 1
GGAGGCCAUCGGACUGCUGUUGAACAGCGGAUCCAUCUGUAAUUCAUUAUCCGAAUUAUUGUCCCCCAUUGAGACGUUACUAAUAUGCGAAAAAUUUCUCCA
(((((.....(((((((((.....)))))).))).((.(((((((.......))))))).((((......).))).............))......))))). ( -24.60)
>DroEre_CAF1 37409 93 - 1
AGAGACCAUCGGACUGCUGUUAAACAGCGGUUCGAUUAGUGAUUCAUUAUCCAAAUUAUUUUC---CAAUGAGAUGUUA------CGGGAAGAUUUUUUCAA
.((((..((((((((((((.....)))))))))))).....................((((((---(..(((....)))------..)))))))..)))).. ( -25.50)
>DroYak_CAF1 43648 99 - 1
AGAGACCAUCGGACUGCUGUUAAACAGUGGUUCGAUCAGUGAUUCAUUAUCCAAAUUAUUGUC---CAAUGAGAGGUUACUAAAACGGGAACUUUUUUUCAA
((.(((((((((((..(((.....)))..)))))))((((((((.........))))))))..---........)))).)).....(..((....))..).. ( -24.90)
>consensus
GGAGGCCAUCGGACUGCUGUUGAACAGCGGUUCGAUCUGUGAUUCAUUAUCCGAAUUAUUGUCC_CCAUUGAGACGUUACUAAAAUGCGAAAAAUUUUUCCA
(((((..((((((((((((.....))))))))))))..(((((((.......))))))).....................................))))). (-18.80 = -19.52 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:51 2006