Locus 6172

Sequence ID 3L_DroMel_CAF1
Location 16,354,482 – 16,354,586
Length 104
Max. P 0.737061
window9908

overview

Window 8

Location 16,354,482 – 16,354,586
Length 104
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 76.76
Mean single sequence MFE -28.46
Consensus MFE -16.39
Energy contribution -15.33
Covariance contribution -1.05
Combinations/Pair 1.42
Mean z-score -1.69
Structure conservation index 0.58
SVM decision value 0.44
SVM RNA-class probability 0.737061
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16354482 104 - 23771897
UUCUGGUUUAACUCGGCGUAAUUCAGUAAUUUUUCAAUUGCCGACAAA---CUAUGUUUGGAGGCCAUUGGAGAAUCGAUUUCCUCUUCUAGCAUAGCCUUUACCUC
....(((.....((((((....................))))))....---(((((((.(((((..((((......))))..)))))...))))))).....))).. ( -24.25)
>DroSec_CAF1 36968 104 - 1
UUCUGGUUUAACUCGGCGUAAUUCAGUAAUUUUUCAAUUGCCGACAGA---CUAUGCUUGGGGGUCAUUGGAGAAUCGAUUUCCUCUUCUAGCAUCGUCUGCACCUC
....(((.....((((((....................))))))((((---(.(((((.(((((..((((......))))..)))))...))))).))))).))).. ( -30.95)
>DroSim_CAF1 40518 104 - 1
UUCUGGUUUAACUCGGCGUAAUUCAGUAAUUUUUCAAUUGCCGACAGA---CUAUGCUUGGGGGUCAUUGGAGAAUCGAUUUCCUCUUCUAGCAUCGUCUGCACCUC
....(((.....((((((....................))))))((((---(.(((((.(((((..((((......))))..)))))...))))).))))).))).. ( -30.95)
>DroEre_CAF1 36883 104 - 1
UUCUGGUUGUGCUCGGCGAAAUUAAGACAUUUUUCGACUGCCGACAGA---CCAUGUUUGGCGGCCAUCGGAGCAUCCUGUUCCUCUUCUAGCAUCGUCUGCAUCUC
........((((..(((((....((((........((..((((.((((---(...))))).))))..))(((((.....)))))))))......))))).))))... ( -28.10)
>DroWil_CAF1 35361 107 - 1
UUCUGACUGCUUUCCAAUUGAUUGAUGCAACGCUCCAGGGCCGAUGGCCCUCCAUGUUUUGGGGUAAUUGGAGCAUUUUGCUCCUCUAGUAGCAUUGAAUGCAUUUC
.......(((.(((.........(((((.(((((((((((((...))))).........))))))....(((((.....)))))....)).)))))))).))).... ( -31.80)
>DroYak_CAF1 43108 104 - 1
UUCUGGUUGUACUCGGCAAAAUUCAGACAUUUUUCCACUGCCGACAGA---CCUUGUUUGGAGGCCAUCGGAGCAUCCUGUUCCUCUUCUAGCAUUGCCUGCAUCUC
....((.((((...(((((....................(((..((((---(...)))))..)))....(((((.....)))))..........))))))))).)). ( -24.70)
>consensus
UUCUGGUUGAACUCGGCGUAAUUCAGUAAUUUUUCAAUUGCCGACAGA___CCAUGUUUGGGGGCCAUUGGAGAAUCGAGUUCCUCUUCUAGCAUCGUCUGCACCUC
....(((.....((((((....................)))))).........(((((.(((((.....(((((.....)))))))))).))))).......))).. (-16.39 = -15.33 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:50 2006