Locus 6171

Sequence ID 3L_DroMel_CAF1
Location 16,354,147 – 16,354,250
Length 103
Max. P 0.690006
window9907

overview

Window 7

Location 16,354,147 – 16,354,250
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 81.55
Mean single sequence MFE -24.24
Consensus MFE -16.72
Energy contribution -16.20
Covariance contribution -0.52
Combinations/Pair 1.48
Mean z-score -1.69
Structure conservation index 0.69
SVM decision value 0.33
SVM RNA-class probability 0.690006
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16354147 103 - 23771897
UUAAUUUUAUCAAUCAUUGUCGAGUUCAAUUCAUCGAAAAGUUCUUUGACGCGAUAAUGGAAGUUUGCAUCACUAUUAUUGAGAUCAACGAAUGACUUUUGGC
.............(((..(((((((...))))........((((.(((((.(((((((((............))))))))).).)))).)))))))...))). ( -16.80)
>DroSec_CAF1 36633 103 - 1
CCAAUUUUAUCAAUCAUUGUCGCGUUAAUUUCAUCGAAAAGUUCUUUGACGCGAUAAUGGAAGUUUGCAUCACUGUUGUUGAGAUCAACAAAUGACUUUUGGC
((((.........(((((((((((((((.................))))))))))))))).........(((...((((((....)))))).)))...)))). ( -27.53)
>DroSim_CAF1 40183 103 - 1
CCAAUUUUAUCAAUCAUUGUCGCGUUAAUUUCAUCGAAAAGUUCUUUGACGCGAUAAUGGAAGUUUGCAUCACUGUUGUUGAGAUCAACAAAUGACUUUUGGC
((((.........(((((((((((((((.................))))))))))))))).........(((...((((((....)))))).)))...)))). ( -27.53)
>DroEre_CAF1 36545 103 - 1
UCAAUUUUAUCUAUCAUUAUCGAAUUAAAUUCUCCAAAGAGUUCCUUGAUGCGAUAAUGGAAGUUGGCAUCGCUGUUGUUGAGAUCAAUGGAUGAUUUUUGCC
.(((..((((((((((((((((.(((((...(((....)))....))))).))))))))((..(..(((.......)))..)..)).))))))))...))).. ( -24.30)
>DroWil_CAF1 35023 103 - 1
UUCAAUUUGUCAUUGAUUAUCGUAUCCAGUUCGGAGUAAAGUUCCUUGAUGCGAUAAUGAAAAUUGGCAUCGUUGUUUGUGAGAUCAGGAUAGGAUUUCUGUU
..((((.(((((((.(((((((((((......((((.....))))..))))))))))).))...)))))..)))).....((((((.......)))))).... ( -24.70)
>DroYak_CAF1 42770 103 - 1
UCAAUUUUAUCUAUCAUUAUCGUGUUAAAUUCUUCAAAAAGUUCUUUGAUGCGAUAAUGGAAGUUGGCAUCACUGUUGUUGAGAUCAAUGGACGACUUUUGGC
.(((((((......(((((((((((((((..(((....)))...))))))))))))))))))))))((......((((((.(......).)))))).....)) ( -24.60)
>consensus
UCAAUUUUAUCAAUCAUUAUCGAGUUAAAUUCAUCGAAAAGUUCUUUGACGCGAUAAUGGAAGUUGGCAUCACUGUUGUUGAGAUCAACAAAUGACUUUUGGC
.............(((((((((((((((.................)))))))))))))))...............((((((....))))))............ (-16.72 = -16.20 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:49 2006