Locus 617

Sequence ID 3L_DroMel_CAF1
Location 1,800,679 – 1,800,771
Length 92
Max. P 0.804256
window950

overview

Window 0

Location 1,800,679 – 1,800,771
Length 92
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 90.44
Mean single sequence MFE -24.72
Consensus MFE -21.38
Energy contribution -20.46
Covariance contribution -0.92
Combinations/Pair 1.27
Mean z-score -1.46
Structure conservation index 0.86
SVM decision value 0.63
SVM RNA-class probability 0.804256
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1800679 92 + 23771897
UUCUAGCUUGUUGGAAA---UGGAUGUACUAAGUGCGCCAAGCGGAUGUUACUUACUCGCUAUGACUAAGCCAAGUUUAUGCUUGGAAAACCCUA
((((((....)))))).---(((.(((((...))))))))((((..((.....))..)))).........((((((....))))))......... ( -22.50)
>DroSec_CAF1 16072 92 + 1
UUCCAGCUUGCUGGAAA---UGGAUGUACUAAGUGUGCCAAGCGGAUGUUACUUACUCGCUAUGACUAAGCCAAGUUUAUGCUUGGAAAACCCUA
((((((....)))))).---.((..((((.....))))((((((..((.....))..)))).))......((((((....)))))).....)).. ( -25.00)
>DroSim_CAF1 16144 91 + 1
UUCCAGCUUGCUGGAAU---UGGAUGUACUAAGUGCGCCAAGCGGAUGU-ACUUACUCGCUAUGACUAAGCCAAGUUUAUGCUUGGAAAACCCUA
((((((....)))))).---(((.(((((...))))))))((((..((.-...))..)))).........((((((....))))))......... ( -26.90)
>DroEre_CAF1 16341 95 + 1
UUCCAGCUUGUUGGGAAUAAUAGUAGUACUAAGUGCAUCAAGCGGAUGUUACUUACUCGCUGUGACUAAGCCAAGUUUAUGCUUGGAAAACCCUA
((((((....))))))...(((((((((...((((((((.....)))).)))))))).))))).......((((((....))))))......... ( -23.90)
>DroYak_CAF1 16513 95 + 1
UUCCAGCUUGUUGGGAAUAAUAGUGGUACUAAGUGCUUUUAGCGGAUGUUACUUACUCGCUAUGACUAAGCCAAGUUUAUGCUUGGAAAACCCUA
((((((....))))))....(((.(((.((.(((.(...(((((..((.....))..))))).)))).))((((((....))))))...)))))) ( -25.30)
>consensus
UUCCAGCUUGUUGGAAA___UGGAUGUACUAAGUGCGCCAAGCGGAUGUUACUUACUCGCUAUGACUAAGCCAAGUUUAUGCUUGGAAAACCCUA
((((((....))))))....(((.(((((...))))))))((((..((.....))..)))).........((((((....))))))......... (-21.38 = -20.46 +  -0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:52 2006