Locus 6169

Sequence ID 3L_DroMel_CAF1
Location 16,352,322 – 16,352,425
Length 103
Max. P 0.574947
window9904

overview

Window 4

Location 16,352,322 – 16,352,425
Length 103
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 93.53
Mean single sequence MFE -39.90
Consensus MFE -36.90
Energy contribution -38.15
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.37
Structure conservation index 0.92
SVM decision value 0.08
SVM RNA-class probability 0.574947
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16352322 103 - 23771897
GGCUGCGACUACGACUGAUGCUCCUGCUGUCGUAGGUUCUGCGCUGCCUGUCAUGGAAGCGAACCAGGUGCUUCAAUUUACGCUUGGGCAGCAAGUCCUUCAG
.(((((..(((((((....((....)).)))))))......((((.((......)).))))..(((((((..........))))))))))))........... ( -38.10)
>DroSec_CAF1 35012 103 - 1
GGCUGCGACUACGACUGUUGCUCCUGCUGUCGUAGGUCCUGCGCUGCCUGGCAUGGAAGCGAACCAGGUGCUUCAAUCUGCGCUUGGGCAGCAAGUCCAUCAG
(((.(((.(((((((....((....)).)))))))......))).)))..(.(((((.((...((((((((........))))))))...))...)))))).. ( -43.60)
>DroSim_CAF1 38586 103 - 1
GGCUGCGACUACGACUGUUGCUCCUGCUGUCGUAGGUCCUGCGCUGCCUGGCAUGGAAGCGAACCAGGUGCUUCAAUCUGCGCUUGGGCAGCAAGUCCAUCAG
(((.(((.(((((((....((....)).)))))))......))).)))..(.(((((.((...((((((((........))))))))...))...)))))).. ( -43.60)
>DroEre_CAF1 35086 103 - 1
GGCUGCGACUACGACUGGGGCUCCUGCUAUCGUAGGUCCUGCGCUGCCUGGCAUUAAAGCGAACCAGGUGCUUCAAUUUGCGCUUGGGCACCAAAUCCUUCAG
(((.(((.((((((....(((....))).))))))......))).)))..((......))...((((((((........))))))))................ ( -34.30)
>consensus
GGCUGCGACUACGACUGUUGCUCCUGCUGUCGUAGGUCCUGCGCUGCCUGGCAUGGAAGCGAACCAGGUGCUUCAAUCUGCGCUUGGGCAGCAAGUCCAUCAG
.(((((..(((((((....((....)).)))))))......((((.((......)).))))..((((((((........)))))))))))))........... (-36.90 = -38.15 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:46 2006