Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,349,631 – 16,349,731 |
Length | 100 |
Max. P | 0.996486 |
Location | 16,349,631 – 16,349,731 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 77.92 |
Mean single sequence MFE | -37.16 |
Consensus MFE | -22.70 |
Energy contribution | -25.02 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.04 |
Mean z-score | -2.14 |
Structure conservation index | 0.61 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939269 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16349631 100 + 23771897 GGGCAACCGCCGCACGGCAGAGAUAUUCGCCAGAUAUCAGCGGGAGCUAUAGCCCAUAGCCCUAUAGGCUAUAGCU---------UUUGCUAAGGCCGCUGCCGGAGGA ((....)).((...((((((.((((((.....))))))((((((((((((((((.(((....))).))))))))))---------)))))).......))))))..)). ( -49.20) >DroSec_CAF1 32452 88 + 1 GGGCAACCGCCGCACGGCAGAGA----CGCCAGAUAUCGGCGGGAGCUAUGGG--------CUAUAGGCUAUAGCU---------UUUGCUAAGGCCGCUACCUGAGGA ((....))(((....(((.....----.))).......((((((((((((((.--------(....).))))))))---------))))))..)))............. ( -35.20) >DroSim_CAF1 36024 92 + 1 GGGCAACCGCCGCACGGCAGAGAUAUUCGCCAGAUAUCGGCGGGAGCUAUGGG--------CUAUAGGCUAUAGCU---------UUUGCUAAGGCCGCUACCAGAGGA ((....))......((((...((((((.....))))))((((((((((((((.--------(....).))))))))---------))))))...))))........... ( -36.10) >DroEre_CAF1 32373 101 + 1 GGGCAACCAGCAAACGGCAGAGAUAUUCGCCAGAUAUCGUCGGGGGCCAUAGGCAAUA--------GGCUAUAGCUUUCAUAGAUUUUGCUAAGGCCGCUGCCGGAGGA ((....))......((((((.((((((.....))))))((((..(((.((((.(....--------).)))).)))..).(((......))).)))..))))))..... ( -34.50) >DroYak_CAF1 38671 108 + 1 GGGCAACCAGCGAACGGUAGAGAUAUUCGCCAGAUAUAGACGGGGACCAUAGGCUAUAGC-CUAUAGACUAUAGCUUUCAUAGAUUUAGCUAAGGCCGCUGCCGGUGGA ((....))......((((((.(.....)(((.....(((..(....).((((((....))-))))...)))(((((...........))))).)))..))))))..... ( -30.80) >consensus GGGCAACCGCCGCACGGCAGAGAUAUUCGCCAGAUAUCGGCGGGAGCUAUAGGC_AUA___CUAUAGGCUAUAGCU_________UUUGCUAAGGCCGCUGCCGGAGGA ((....)).((...((((((.....((((((.......))))))......................((((.((((.............)))).)))).))))))..)). (-22.70 = -25.02 + 2.32)
Location | 16,349,631 – 16,349,731 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 77.92 |
Mean single sequence MFE | -36.14 |
Consensus MFE | -25.92 |
Energy contribution | -25.80 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.22 |
Mean z-score | -2.67 |
Structure conservation index | 0.72 |
SVM decision value | 2.70 |
SVM RNA-class probability | 0.996486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16349631 100 - 23771897 UCCUCCGGCAGCGGCCUUAGCAAA---------AGCUAUAGCCUAUAGGGCUAUGGGCUAUAGCUCCCGCUGAUAUCUGGCGAAUAUCUCUGCCGUGCGGCGGUUGCCC ......((((((.((((((((...---------((((((((((((((....))))))))))))))...))))).....((((........))))....))).)))))). ( -49.20) >DroSec_CAF1 32452 88 - 1 UCCUCAGGUAGCGGCCUUAGCAAA---------AGCUAUAGCCUAUAG--------CCCAUAGCUCCCGCCGAUAUCUGGCG----UCUCUGCCGUGCGGCGGUUGCCC ......(((((((((..((((...---------.))))..)))....(--------((((..((...(((((.....)))))----.....))..)).))).)))))). ( -35.00) >DroSim_CAF1 36024 92 - 1 UCCUCUGGUAGCGGCCUUAGCAAA---------AGCUAUAGCCUAUAG--------CCCAUAGCUCCCGCCGAUAUCUGGCGAAUAUCUCUGCCGUGCGGCGGUUGCCC ......(((((((((..((((...---------.))))..)))....(--------((((..((...(((((.....))))).........))..)).))).)))))). ( -32.40) >DroEre_CAF1 32373 101 - 1 UCCUCCGGCAGCGGCCUUAGCAAAAUCUAUGAAAGCUAUAGCC--------UAUUGCCUAUGGCCCCCGACGAUAUCUGGCGAAUAUCUCUGCCGUUUGCUGGUUGCCC ......(((((((((..((((.............))))..)))--------....((..(((((....((.((((((....).))))))).)))))..))..)))))). ( -29.62) >DroYak_CAF1 38671 108 - 1 UCCACCGGCAGCGGCCUUAGCUAAAUCUAUGAAAGCUAUAGUCUAUAG-GCUAUAGCCUAUGGUCCCCGUCUAUAUCUGGCGAAUAUCUCUACCGUUCGCUGGUUGCCC ......((((((((...(((((...........)))))..(.((((((-((....)))))))).).))))......(..((((((.........))))))..).)))). ( -34.50) >consensus UCCUCCGGCAGCGGCCUUAGCAAA_________AGCUAUAGCCUAUAG___UAU_GCCUAUAGCUCCCGCCGAUAUCUGGCGAAUAUCUCUGCCGUGCGGCGGUUGCCC ......(((((((((..((((.............))))..)))........................(((((.....(((((........)))))..))))))))))). (-25.92 = -25.80 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:45 2006