Locus 6167

Sequence ID 3L_DroMel_CAF1
Location 16,348,060 – 16,348,171
Length 111
Max. P 0.711648
window9901

overview

Window 1

Location 16,348,060 – 16,348,171
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.60
Mean single sequence MFE -23.60
Consensus MFE -16.28
Energy contribution -17.60
Covariance contribution 1.32
Combinations/Pair 1.29
Mean z-score -1.56
Structure conservation index 0.69
SVM decision value 0.38
SVM RNA-class probability 0.711648
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16348060 111 - 23771897
AGUAAUUUGGCGUUCUAAUGAUAAGUGCAUAGAAUUUAGCAAAUUGCAAAUUUAUUAUGGUUUUAAAUUAAACUCGCAGAAGUGAGUUAUAAAAGAU---------GCUUAUAAAGAUAC
.((((((((..((((((.((.......))))))))....))))))))...(((((...(((.........(((((((....))))))).........---------))).)))))..... ( -20.77)
>DroSec_CAF1 30923 109 - 1
AGUAACUUGUCGUUCUAAUGAUAAGUGCAUAGAACUUAGCAAAUUGCA-AUUUAUUAUGGUUCGAAAUUAAACUCGCAGAAGCGAGUUAUAAAAGGA---------GCUUAUAAAGAUA-
.(((.((((((((....)))))))))))..........((.....)).-.(((((...(((((.......(((((((....))))))).......))---------))).)))))....- ( -26.04)
>DroSim_CAF1 33547 109 - 1
AGUAACUUGUCGUUCUAAUGAUAAGUGCAUAGAACUUAGCAAAUUGCA-AUUUAUUAUGGUUUUAAAUUAAACUCGCAGAAGCGAGUUAUAAAAGGA---------GCUUAUAAAGAUA-
.(((.((((((((....)))))))))))..........((.....)).-.(((((...((((((......(((((((....)))))))......)))---------))).)))))....- ( -24.90)
>DroEre_CAF1 30802 105 - 1
GGUAACUUGUCGUUCUAAUGAAAAGUGCAUGGAAUUCAACAAGGUGCA-CUUUAUUGUGGUUUUAAAUUAAACUCGCGGAAGCA-GUU----AAGGG---------GUUUCGUAACGUGU
.(((.(((.((((....)))).))))))(((((((((.........((-(......)))...........((((.((....)))-)))----...))---------)))))))....... ( -21.70)
>DroYak_CAF1 37127 111 - 1
AGUAACUUG---UUCUAAUGAUAAGUGCACGGAAUUCAGAAAGAUGCA-UUUUAUUGUGCUUUUAAAUUAAAUUUGCGAAAGCG-GUU----AAGGGGCUAGAAAGGUUUCAUAACGUGU
....(((((---((.....)))))))((((........(((((.((((-......)))))))))..........(((....)))-(((----(.(..(((.....)))..).)))))))) ( -24.60)
>consensus
AGUAACUUGUCGUUCUAAUGAUAAGUGCAUAGAAUUUAGCAAAUUGCA_AUUUAUUAUGGUUUUAAAUUAAACUCGCAGAAGCGAGUUAUAAAAGGA_________GCUUAUAAAGAUA_
.(((((((((.((((((.((.......))))))))...))))))))).......................(((((((....)))))))................................ (-16.28 = -17.60 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:43 2006