Locus 6166

Sequence ID 3L_DroMel_CAF1
Location 16,343,846 – 16,343,936
Length 90
Max. P 0.647578
window9900

overview

Window 0

Location 16,343,846 – 16,343,936
Length 90
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 81.26
Mean single sequence MFE -24.25
Consensus MFE -16.18
Energy contribution -16.94
Covariance contribution 0.76
Combinations/Pair 1.21
Mean z-score -1.73
Structure conservation index 0.67
SVM decision value 0.24
SVM RNA-class probability 0.647578
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16343846 90 - 23771897
CAAAUAUAGAUAGUGAUG--UCCAAAACGAUAACUGCUUAUCGCAAUCAGCUGAGAGCGCCUAGUGCGACCCUUCGUGUAAGCAGUGCAGCA
........(((.((((((--..((..........))..)))))).))).((((...((..((.(..(((....)))..).))..)).)))). ( -21.00)
>DroSec_CAF1 26769 86 - 1
CAAAUAUAGAUAGCUA-A--UCAAAAUCGAU---UGCUUAUCGCAAUCAGCUGAGUGCGCCUAGUGCGACCCUUCGCGCAAGCAGUGUGGCA
............((((-.--........(((---(((.....)))))).((((..(((((..((.......))..)))))..)))).)))). ( -26.80)
>DroSim_CAF1 29396 89 - 1
CAAAUAUAGAUAGCUA-A--UCAAAAUCGAUAACUGCUUAUCGCAAUCAGCUGAGUGCGCCUAGUGCGACCCUUCGCGCAAGCAGUGUAGCA
............((((-(--((......))).(((((((..((((.((....)).))))....((((((....))))))))))))).)))). ( -27.80)
>DroEre_CAF1 26889 88 - 1
CUA----AGGUUAUCGAGUUUCAAAAACGAUAACUGCUCAUCGCAAUCAGCUGAGUGCGUUCAGUGCGACCCUUCGCGCAAGCAGUGCACCA
...----.((((((((...........)))))((((((...((((.((....)).))))....((((((....)))))).))))))..))). ( -26.70)
>DroYak_CAF1 33065 90 - 1
CAAAUUUAGAUAGUCAAG--CCAAAAACGAUAACUGCUCAUUUUAAUCAGCUGAGUGCGUUCAGUGCGACCCUUAGCGCAAGCAGUGCAUCA
..................--........(((.((((((...........((((((.((((.....))).).))))))...))))))..))). ( -18.94)
>consensus
CAAAUAUAGAUAGUCA_G__UCAAAAACGAUAACUGCUUAUCGCAAUCAGCUGAGUGCGCCUAGUGCGACCCUUCGCGCAAGCAGUGCAGCA
................................(((((((..((((.((....)).))))....((((((....)))))))))))))...... (-16.18 = -16.94 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:42 2006