Locus 6164

Sequence ID 3L_DroMel_CAF1
Location 16,335,587 – 16,335,707
Length 120
Max. P 0.758688
window9897

overview

Window 7

Location 16,335,587 – 16,335,707
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.64
Mean single sequence MFE -39.90
Consensus MFE -36.21
Energy contribution -37.65
Covariance contribution 1.44
Combinations/Pair 1.08
Mean z-score -1.56
Structure conservation index 0.91
SVM decision value 0.50
SVM RNA-class probability 0.758688
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16335587 120 - 23771897
GUUUUGGAAGUGGAGUAUAUGGCCAUCAAAGGCGUGGGCUGCAGACCAGCCACCGAGGAAAUGUUCACUAUGAGUCCACCUCUACCACCUUUUGACUUGUCCAUGUAUUCGAGUGCCGUC
.....((.(.(.((((((((((.(((((((((.((((((((.....)))))...((((.....(((.....)))....))))...))))))))))..)).)))))))))).).).))... ( -40.20)
>DroSec_CAF1 18497 120 - 1
GUUUUGGAAGUGGAGUAUAUGGCCAUCAAAGGCGUGGGCUGCAGUCCAGCCACUGAGGAAAUGUUCACUAUGAGUCCACCUCUACCACCAUUUGACUUGUCCAUGUACUCCAAGGCGGUC
......(...((((((((((((.((((((((((.(((((....))))))))...((((.....(((.....)))....))))........)))))..)).))))))))))))...).... ( -40.70)
>DroSim_CAF1 18312 120 - 1
GUUUUGGAAGUGGAGUAUAUGGCCAUCAAAGGCGUGGGCUGCAGUCCAGCCACAGAGGAAAUGUUCACUAUGAGUCCACCUCUACCACCUUUUGACUUGUCCAUGUACUCCAAGGCGGUC
......(...((((((((((((.(((((((((.((((((((.....)))))..(((((.....(((.....)))....)))))..))))))))))..)).))))))))))))...).... ( -44.90)
>DroYak_CAF1 18383 120 - 1
GUUUUGGAUGUUGAGUAAAUGGCCAUCAAAGGCGUGGGCUGAAGUCCGGCUACCGAGGAAAUGUUCACUAUGAGUCCACCUCUACCACCUUUGAACUUGUCCAUGUACUCCAGUGCCGUC
.....((.....(((((.((((.(((((((((..(((((((.....))))....((((.....(((.....)))....))))..))))))))))...)).)))).))))).....))... ( -33.80)
>consensus
GUUUUGGAAGUGGAGUAUAUGGCCAUCAAAGGCGUGGGCUGCAGUCCAGCCACCGAGGAAAUGUUCACUAUGAGUCCACCUCUACCACCUUUUGACUUGUCCAUGUACUCCAAGGCCGUC
....(((...((((((((((((.(((((((((.((((((((.....)))))...((((.....(((.....)))....))))...))))))))))..)).))))))))))))...))).. (-36.21 = -37.65 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:39 2006