| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,334,384 – 16,334,489 |
| Length | 105 |
| Max. P | 0.582446 |
| Location | 16,334,384 – 16,334,489 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 78.22 |
| Mean single sequence MFE | -32.62 |
| Consensus MFE | -17.08 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582446 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16334384 105 - 23771897 AUAUCCUCCAGUAGCCCAGUGUCCGUGAAUCCGGGACAGAUGGUAAGGAAGCCUACACCAGAGUGGGCGUAAAAGUAGGGGUUCUAAGGGGGAUGACAUAUGAUU .((((((((((.(((((..(((((.((....)))))))............((((((......))))))..........)))))))..)))))))).......... ( -35.60) >DroPse_CAF1 16166 105 - 1 AUGUCGUCCAGCAGGGGCGUCUCAGUGAAUCCCGGACAGAUGGUCACAAAGCUCACUCCCGAGUGGGCAAAGUAGAUGGGAUUCUAGAGCAGAAAAGAGUCAAUC .((.(((((.....))))(.(((...(((((((((((.....))).....(((((((....)))))))........))))))))..))))........).))... ( -34.10) >DroSec_CAF1 17317 105 - 1 AUAUCCUCCAGCAGGCCAGUGUCCGUGAAUCCGGGACAGAUGGUAAUGAAGCCUACACCAGAGUGGGCGUAAAAGAAGGGGUUCUAAGGGGGAUGACAUAUGAUU .((((((((.((..((((.(((((.((....)))))))..))))......((((((......))))))))...((((....))))..)))))))).......... ( -35.30) >DroEre_CAF1 17092 105 - 1 AUGUCCUCCAGGAGUCCCGUGUUCGUGAAUCCCGGACAGAUGGUAAUGAAGCCUACUCCAGAGUGAGCAUAAAAGAAGGGGUUCUAAAAGGGAUGAAAUAUUAUU ..(((((...(((..(((.((((((.(....)))))))............((.((((....)))).)).........)))..)))....)))))........... ( -26.50) >DroYak_CAF1 17005 104 - 1 AUAUCCUCUAGGAGUCCGGUGUUCGUGAAUCCCGGACAAAUGGUAAUGAAGCCUACUCCAGAGUGGGCAUAAAAGAAGGGGUUCUAAAGGUGAU-AAAUAUUUUU ....(((.(((((((((((..((....))..)))))).............(((((((....))))))).............))))).)))....-.......... ( -30.60) >DroPer_CAF1 16264 105 - 1 AUGUCGUCCAGCAGGGGCGUCUCAGUGAAUCCCGGACAGAUGGUCACAAAGCUCACUCCCGAGUGGGCAAAGUAGAUGGGAUUCUACAGCAGAAAAGAGUCAAUU ..(.(((((.....))))).)...(((((((((((((.....))).....(((((((....)))))))........)))))))).)).................. ( -33.60) >consensus AUAUCCUCCAGCAGGCCCGUGUCCGUGAAUCCCGGACAGAUGGUAAUGAAGCCUACUCCAGAGUGGGCAUAAAAGAAGGGGUUCUAAAGGGGAUGAAAUAUAAUU ..........................(((((((..((.....))......(((((((....))))))).........)))))))..................... (-17.08 = -17.30 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:38 2006