| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,328,761 – 16,328,867 |
| Length | 106 |
| Max. P | 0.973268 |
| Location | 16,328,761 – 16,328,867 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.30 |
| Mean single sequence MFE | -48.59 |
| Consensus MFE | -22.73 |
| Energy contribution | -22.42 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.973268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16328761 106 - 23771897 ACAUGGUGGCUGCGAGCCACAGCAACUGGAAUCUUGGC------CAGCACCUGGUUGCGCACGCCUUCAUCGUGGACGCGUUGAAGAUGAAGCGACUUGGCCGCAGCCACUU ....((((((((((.(((((((...((((........)------)))...)))(((((...((.(((((.(((....))).))))).))..))))).)))))))))))))). ( -49.60) >DroVir_CAF1 12708 106 - 1 ACAUGGGAGCUGCGAGCAACUGGAAUCGAGCGAGCGCU------GAGCAGCUCGUUGCGCAGCUUCUCGGAGGCGACACGCUUCAGAUGAAUGGACUUGGCAGCGGCCACCU .((((((((((((..(((((.(....)((((..((...------..)).))))))))))))))))))..((((((...))))))..)))...((...((((....)))))). ( -39.80) >DroPse_CAF1 11558 112 - 1 ACAUGGUGGCUGCGGGCCACUGGCACUGGCACAGCGAUGGGAUGGAGGAUCUCGUUGCGAACCUUCUCCUCGUGGACGCGCUUCAGGUGGAGGGCCUUGGCGGCGGCCACUU ....(((((((((..((((..(((.........((((((((((.....))))))))))...(((((.((((((....)))....))).)))))))).)))).))))))))). ( -53.20) >DroEre_CAF1 11724 106 - 1 ACAUGGUGGCUGCGAGCCACUGCAACUGGAAUCUUGGU------CAGCACCUGGUUGCGCACCCCUUCGUCAUGGACACGUUGAAGAUGAAGGGACUUGGCCGCAGCCACUU ....((((((((((.((((..(((((..(...((....------.))...)..)))))....(((((((((.(.((....)).).)))))))))...)))))))))))))). ( -51.00) >DroYak_CAF1 11698 106 - 1 ACAUGGUGGCUGCGAGCCACAGCAACUGGAAUCUUGGC------CAGCACUUGGUUGCGCACUCCCUCAUCAUGGACGCGAUGAAGAUGAAGGGACUUGGCCGCAGCCACUU ....((((((((((.((((..(((((..(...((....------.))...)..)))))....(((((((((..............)))).)))))..)))))))))))))). ( -44.74) >DroPer_CAF1 11614 112 - 1 ACAUGGUGGCUGCGGGCCACUGGCACUGGAAUAGCGAUGGGAUGGAGGAUCUCGUUGCGAACCUUCUCCUCGUGGACGCGCUUCAGGUGGAGGGCCUUGGCGGCGGCCACUU ....(((((((((..((((..(((.........((((((((((.....))))))))))...(((((.((((((....)))....))).)))))))).)))).))))))))). ( -53.20) >consensus ACAUGGUGGCUGCGAGCCACUGCAACUGGAAUAGCGGU______CAGCACCUCGUUGCGCACCCCCUCAUCGUGGACGCGCUGAAGAUGAAGGGACUUGGCCGCAGCCACUU ....(((((((((..((((.........................(((...))).........(((.(((((..............))))).)))...)))).))))))))). (-22.73 = -22.42 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:37 2006