Locus 6161

Sequence ID 3L_DroMel_CAF1
Location 16,319,353 – 16,319,450
Length 97
Max. P 0.562823
window9894

overview

Window 4

Location 16,319,353 – 16,319,450
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 84.30
Mean single sequence MFE -26.22
Consensus MFE -19.96
Energy contribution -20.35
Covariance contribution 0.39
Combinations/Pair 1.11
Mean z-score -1.76
Structure conservation index 0.76
SVM decision value 0.06
SVM RNA-class probability 0.562823
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16319353 97 + 23771897
GCUUUAGAAAUUACUU-CACGUAAUUAUGUGUAAAACAACCAACCGCUGCUCCAGCGGCCAGGAGCUGCUUGGACACCUGCAGUCCAAUGCCUCCAGC
........((((((..-...)))))).(((.....))).....((((((...))))))...((((..((((((((.......)))))).))))))... ( -27.00)
>DroSec_CAF1 2028 97 + 1
GUUUUAGAAAUCACUU-CACGUAAUAAUGUGUAAAAUAACCCACCGCUGCUCCAGCGGCCAGGAGCUGCUUGGACACCUGCAGUCCAAUGCCUCCAGC
................-(((((....)))))............((((((...))))))...((((..((((((((.......)))))).))))))... ( -26.30)
>DroSim_CAF1 2039 97 + 1
GUUUUAGAAAUUACUU-CACGUAAUAAUGUGUAAAAUAACCCACCGCUGCUCCAGCGGCCAGGAGCUGCUUGGACACCUGCAGUCCAAUGCCUCCAGC
((((((.(.(((((..-...)))))....).))))))......((((((...))))))...((((..((((((((.......)))))).))))))... ( -27.30)
>DroEre_CAF1 2039 96 + 1
CUUUUAGAAAUUACUU-CACGUAAUACUGUGUA-AUUAACCCACCGCUGCUCCAGCGGAUAGGAGCUGCUUGGACACCUGCAGCCCAAUGCCUCCAGC
.........(((((..-...))))).(((.(((-.........((((((...))))))...((.(((((..((...)).)))))))..)))...))). ( -25.00)
>DroYak_CAF1 2041 96 + 1
CUUUAAGAAAUUAUUU-UACGUAAUAAUAUUUU-AUUAACCCACCGCUGCUCCAGCAGAAAGGAGCUGCUUGGACACCUGCAGUCCAAUGCCUCCAGC
...(((((.((((((.-.....)))))).))))-)...........((((....))))...((((..((((((((.......)))))).))))))... ( -23.50)
>DroAna_CAF1 2047 98 + 1
UUUUGAAAAACUAUUCUCCUGGCAUCUUGCUAAGAACGACCUACCGCUGCUCCGGCGGAUAGAAGUUGCUUGGACACCUGGAGACCGAUGCCUCCAGC
....................((((((.((((((((((...(((((((((...)))))).)))..))).))))).))...(....).))))))...... ( -28.20)
>consensus
GUUUUAGAAAUUACUU_CACGUAAUAAUGUGUAAAAUAACCCACCGCUGCUCCAGCGGACAGGAGCUGCUUGGACACCUGCAGUCCAAUGCCUCCAGC
...........................................((((((...))))))...((((..((((((((.......)))))).))))))... (-19.96 = -20.35 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:36 2006