Locus 6160

Sequence ID 3L_DroMel_CAF1
Location 16,317,312 – 16,317,431
Length 119
Max. P 0.688254
window9893

overview

Window 3

Location 16,317,312 – 16,317,431
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.38
Mean single sequence MFE -37.16
Consensus MFE -22.98
Energy contribution -23.02
Covariance contribution 0.03
Combinations/Pair 1.41
Mean z-score -1.65
Structure conservation index 0.62
SVM decision value 0.32
SVM RNA-class probability 0.688254
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16317312 119 + 23771897
AUGGUUUGCGCUUUGGGUAUUGAAGGCAGUGCCAAUAAAAUUGGCAUUGGCAUAAUUCGAGAUGGUAAAGUACUGGCGAACGUACGUAGAACGUACAUUACCCCACCAGGAGAAGGUAU-
...((((((((((((....((((((.((((((((((...)))))))))).)....))))).....))))))....))))))(((((.....)))))..((((((....))....)))).- ( -34.90)
>DroVir_CAF1 1 120 + 1
AUGGUUUGCGCGCUGGGCAUCGAAGGCAGCGCCAAUAAAAUUGGUGUUGGCAUCAUAAACGAUGGCAAAGUAUUGGCAAAUGUGCGACGCACCUACAUAACACCGCCCGGUGAAGGUAUC
..(((.(((((((...((...((.(.((((((((((...)))))))))).).)).....(((((......)))))))....))))).)).)))(((....((((....))))...))).. ( -38.60)
>DroGri_CAF1 1 119 + 1
AUGGUUUGCGCUCUGGGAAUUGAGGGCAGCGCCAAUAAAAUUGGCAUUGGCAUCGUCAACGAUGGCAAGGUGCUGGCAAAUGUGAGACGCACAUAUAUAACACCACCCGGUGAAGGUAA-
...((.((((.(((.(.(.(((..((((.(((((((...)))))).(((.(((((....))))).)))).))))..))).).).))))))).))......((((....)))).......- ( -40.70)
>DroWil_CAF1 1 115 + 1
AUGGUUUGUUCAUUGGGUAUCGAGGGCAGCGCCAAUAAAAUUGGCAUAGGUAUUAUUCGCGAUGGAGAGGUCUUGGCCAAUGUUCGACGCACCUAUAUCACACCACCGGGUGAGG-----
........((((((.(((.....((.....((((((...))))))((((((.......(((.((((.((((....)))..).)))).)))))))))......))))).)))))).----- ( -29.91)
>DroMoj_CAF1 1 120 + 1
AUGGUUUGCGCGCUGGGCAUCGAGGGCAGCGCCAAUAAAAUUGGCGUUGGAAUUAUAAACAAUGGCAAAGUAUUGGCAAAUGUGCGACGCACAUACAUUACACCGCCCGGCGAAGGUAUG
......(((.((((((((............(((((((...(((.(((((..........))))).)))..)))))))..((((((...))))))..........))))))))...))).. ( -42.90)
>DroAna_CAF1 1 119 + 1
AUGGUCUGUGCUUUGGGAAUUGAAGGCAGUGCCAAUAAAAUUGGCAUUGGCAUAAUAAAGGAUGGCGAGGUUUUGGCCAAUGUGAGAAGAACCUACAUCACACCACCUGGAGAAGGUUU-
..(..((...(((..((.......(.((((((((((...)))))))))).).........((((...(((((((.............))))))).))))......))..))).))..).- ( -35.92)
>consensus
AUGGUUUGCGCUCUGGGAAUCGAAGGCAGCGCCAAUAAAAUUGGCAUUGGCAUAAUAAACGAUGGCAAAGUAUUGGCAAAUGUGCGACGCACCUACAUAACACCACCCGGUGAAGGUAU_
..........((((((((......(.((((((((((...)))))))))).).......................((...(((((.(.....).)))))....))))))))))........ (-22.98 = -23.02 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:35 2006