Locus 6159

Sequence ID 3L_DroMel_CAF1
Location 16,316,258 – 16,316,358
Length 100
Max. P 0.519179
window9892

overview

Window 2

Location 16,316,258 – 16,316,358
Length 100
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 77.83
Mean single sequence MFE -16.18
Consensus MFE -8.77
Energy contribution -11.65
Covariance contribution 2.88
Combinations/Pair 1.10
Mean z-score -1.94
Structure conservation index 0.54
SVM decision value -0.03
SVM RNA-class probability 0.519179
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16316258 100 - 23771897
GCUUCUAUAAUUCAACGAAAGA----UUGACUAUCAAAUAAUUGCUUAAUUGGCAAUAAAACUAAUUCUUCUAUGAGUUAUACAAGCUCCAAUUCCGAAUUUUG
((((.(((((((((.(....).----..............((((((.....))))))................))))))))).))))................. ( -19.50)
>DroSec_CAF1 2835 90 - 1
GCUUCUAUAAUUCAACGAAAGA----UUGACUAUCAAAUAAUUGCUUAAUUGGCAAUAAAACUAAUUCCUCCAUGA---------GCUCCAAUUCCGAAUUUU-
((((.......(((((....).----))))..........((((((.....)))))).................))---------))................- ( -12.10)
>DroSim_CAF1 2835 99 - 1
GCUUCUAUAAUUCAACGAAAGA----UUGACUAUCAAAUAAUUGCUUAAUUGGCAAUAAAACUAAUUCCUCUAUGAGUUAUACAAGCUCCAGUUCCAAAAUUU-
((((.(((((((((.(....).----..............((((((.....))))))................))))))))).))))................- ( -19.50)
>DroEre_CAF1 2833 93 - 1
GGUCCCAUAAUUUAACGAACGAACUUUGGACUA--AAGUAAUUCCUUAAUUGCCAAUAUAACUGAUUCCACUUUGAGUUAUAUAAGUACCAAUUU---------
.........................(((((((.--..((((((....))))))..((((((((.(........).)))))))).))).))))...--------- ( -13.60)
>consensus
GCUUCUAUAAUUCAACGAAAGA____UUGACUAUCAAAUAAUUGCUUAAUUGGCAAUAAAACUAAUUCCUCUAUGAGUUAUACAAGCUCCAAUUCCGAAUUUU_
((((.(((((((((.(....)...................((((((.....))))))................))))))))).))))................. ( -8.77 = -11.65 +   2.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:34 2006