Locus 6158

Sequence ID 3L_DroMel_CAF1
Location 16,314,584 – 16,314,675
Length 91
Max. P 0.599863
window9891

overview

Window 1

Location 16,314,584 – 16,314,675
Length 91
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 78.62
Mean single sequence MFE -38.14
Consensus MFE -26.17
Energy contribution -28.13
Covariance contribution 1.96
Combinations/Pair 1.25
Mean z-score -1.19
Structure conservation index 0.69
SVM decision value 0.13
SVM RNA-class probability 0.599863
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16314584 91 + 23771897
UGCUGC---GGUGGCGGCUGUUGCACGGUGGUGGCACUACUGGCCACCGUUUCCGAUUCGGAAGACUCGCUGGCCCGUCGACUGCCGCUGUGCA
....((---.(..(((((.((((.((((.((((((.(....)))))))(((..(((.((....)).)))..))))))))))).)))))..))). ( -45.70)
>DroVir_CAF1 1220 79 + 1
GUCUG---------------CGGCACAGCCGUCACACUGCUGGCCACCGUUUCGGACUCGGAUGAUUCGCUGGCGCGUCGACUGCCAUUGUGCA
.....---------------..(((((((.(((((.(.((..((......((((....))))......))..))).)).))).))...))))). ( -24.00)
>DroPse_CAF1 1171 94 + 1
ACCUGUUGCAUCACAGGCGGCGGCACAGCGGUCGCACUGCUGGCCACAGUUUCGGACUCUGAGGAUUCGCUGGCCCGCCGGCUGCCGCUAUGCA
......(((((....(((((((((.((((((.....)))))))))....((((((...))))))....(((((....))))).))))))))))) ( -41.00)
>DroSec_CAF1 1157 91 + 1
UGCUGC---UGUGGCGGCUGUUGCACGGUGGUGGCACUACUGGCCACUGUUUCCGAUUCGGAUGACUCGCUGGCCCGCCGACUGCCGCUGUGCA
.(((((---....)))))...((((((((((..(.......(((((..(((((((...)))).)))....)))))......)..)))))))))) ( -40.82)
>DroEre_CAF1 1156 91 + 1
UGCUGC---GGUGGUGGCUGUUGCACGGUGGUGGCACUACUGGCCACCGUUUCGGAUUCAGACGACUCGCUGGCCCGUCGACUGCCGCUUUGCA
....((---((.((((((.((((.(((((((.....)))).(((((.((..(((........)))..)).)))))))))))).)))))))))). ( -38.90)
>DroYak_CAF1 1156 91 + 1
UGCUGC---AGUGGCGGCUGUUGAACGGUGGUGGCACUACUGGCCACUGUUUCCGAUUCAGAGGACUCGCUGGCCCGUCGACUGCCGUUGUGCA
....((---.(..(((((.(((((.((((((.....)))).(((((.((..(((........)))..)).)))))))))))).)))))..))). ( -38.40)
>consensus
UGCUGC___AGUGGCGGCUGUUGCACGGUGGUGGCACUACUGGCCACCGUUUCCGAUUCGGAGGACUCGCUGGCCCGUCGACUGCCGCUGUGCA
.(((((.......)))))....((((((((((((....((.(((((.((..((..........))..)).))))).))...)))))))))))). (-26.17 = -28.13 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:33 2006